Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00111 ATGTACAATAATGTTGGAACTCAGCCTACAGCTCCACAACCACCTTTGAGTTCTCCACCTAACCCATTTGGGAATGCATTTTATGGAGCTGGTTCAGGGCTTATTCGTGGTGGATTAGGTGCATATGGGGAGAAAATCTTTGGATCAAGCTCTGAATATGTTCAAAGCAATATAAGTCGATATTTTTCAGATCCCCAATATTATTTCCAAGTCAATGACCAGTATGTGAGAAACAAATTGAAGGTGGTTCTATTTCCTTTTCTTCACAGGGGCCATTGGACTCGAATAACAGAGCCAGTTGGAGGAAGGCTGTCTTATAAACCCCCAATTTATGATATTAATGCTCCAGACTTGTACATTCCATTCATGGCATTTGGCAGTTATGTAGTTCTTGCTGGGTTCTCATTGGGTCTTCAAGGAAAGTTTAGTCCGGAATCTCTAAATTGGTTGTTCATCAAGGGATTGCTTGGCTGGTTTTTGCAAGTTATGCTACTTAAAGTAACACTTCTTTCATTGGGAAGTGGGGAGGCACCCTTGATGGATATCATTGCCTACGCCGGCTATATTTTCCCTGGGATGTGTTTGGCTGCTGTAGGGAAAATCATGTGGAGGTACTCTTACTATATTTTAATGCCATGGACCTCCTTATGCATGGGAATTTTCTTGGTGAAAACAATGAAGAGAGTCCTTTTTGCTGAGGTGAGGAGTTATGATTCAAGTAGGCATCACTATCTCTTGCTTTTCATTGCTTTGGCCCAGTTTCCTCTTTTCATTTGGCTTGGCAACATTAGCATTAATTGGCTCTTGTAA 810 41.11 MYNNVGTQPTAPQPPLSSPPNPFGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGSYVVLAGFSLGLQGKFSPESLNWLFIKGLLGWFLQVMLLKVTLLSLGSGEAPLMDIIAYAGYIFPGMCLAAVGKIMWRYSYYILMPWTSLCMGIFLVKTMKRVLFAEVRSYDSSRHHYLLLFIALAQFPLFIWLGNISINWLL 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1560232 1561983 + BLOR18043 Blo07g00111 62635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00111 269 Pfam YIF1 41 260 IPR005578 GO:0005789|GO:0006888
Blo07g00111 269 PANTHER YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN 1 266 IPR005578 GO:0005789|GO:0006888
Blo07g00111 269 PANTHER INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN 1 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00111 K20362 YIF1; protein transport protein YIF1 - jre:109005477 489.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00442 Blo07g00111 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00442 Blo-Chr2:6068640 Blo07g00111 Blo-Chr7:1560232 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1240 . . . . . Bpe14g01056 . . . . Cma06g01631 . Car06g01386 . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01851 Blo02g00442 Blo07g00111 Bda11g00475 . . . Bma02g00975 . . Cmo06g01629 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004914 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00111 Blo_Chr07 FPKM 25.547228 29.839674 16.832447 17.22378 12.33306 10.208692 12.941032 10.801071 9.070934 10.52145