Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00126 ATGCCCTTGCTTTTAAACCACCGCACATCATGCCGGATATCGAGCATCAAACCCATCGCCATTTCTGGGTCCGAGAGAGCTCAATTCACAGTAAAAGGCATCAACATTTATAGGCCTAGTGTGAGGTTACTCTGTGCATTCGAAGGCAAATATTTACTCCACGAAACTTGTTATGATTTGATTGACGGTGGTGATGCTTCCATGGAGCAAGATGAGCTTCAAACTCTCAGATTCACCTGCTCTGTCCCAGATGCTATCGGTAGAGGATTCATCGAGATTGAAGATGATGACCTTTCCAGCACCTTCTTTCCGTTTATAGTTGCAGAGCCTGTTGTTTGTTCTGAAATCCGCACCCTCGAGTCCGTCATTGATGAGGCCGAGACTCCAATTACTAGAGCGAGGACAATATCCCTGGACTTCATACACGAACTGGGATGGCTTCTTCATCGAAATAGGGTGTCTCAAAGACTCGGTCGAATGGACCCTAATCTCAATCGATTCTCGTTTGAACGGTTCAAGTGGCTCATCAAGTTTTCGATGGAGCGTGATTGGTGTGCGGTAGTGAATAAACTATTGGGTATTTTCTTTGAAGGCCGTACTGTTTCTCAAGGTGAGCATCCTTCAATGGAGTTTGCCCTTGTGGAAATGGATCTTCTTCATCGCGCTGTGCAGAGAAATTGCAGGCCTATGGTAGAACTCCTACTATCGTTTGTTCCCACCAAACAGTCGAATAAACCGGGATTCGACAAGCATCGACCGAACAACTACTTGTTTAAACCTGATGCTGTTGGGTCGGCCGGTTTGACTCCACTTCACATTGCAGCAAGCTGCGATGGCTATGAAAATGTGCTGGATGCCTTGACAAACGATCCCGGAATGGTGGGAATTAAGGCATGGAAAACATCTCGGGACGCTACAGGTTTGACACCGAACAATTACGCATGTTTGCGAGGCCACTTTTCATACATTCGGCTTGTCCAGAAAAAATGCGGGAAGATCGTAGAAAGCGGAAGTGTAGTGCTCGAAATCCCCAATAACGCATCAAAAATATGCAGCCTATGGACCGAATCGACGATGAAGGGAAAAGAGGCAATTGGACATTGCAGGGTTTGTGAGGCAAAGTCGGTTCGCGGGTACAAATCGGGTGCATTTGTATACCGGCCAGCAATGCTATCGATGGTTATTATCGCTGCAGTTTGTGTATGTGTGGCTCTTCTTTTCAAGAGCTCGCCGGATGTTCGTTGCAGTTTCCGGCCTTTCCGGTGGGAGGCATTGAAATACGGGCCGAGGTAG 1293 47.18 MPLLLNHRTSCRISSIKPIAISGSERAQFTVKGINIYRPSVRLLCAFEGKYLLHETCYDLIDGGDASMEQDELQTLRFTCSVPDAIGRGFIEIEDDDLSSTFFPFIVAEPVVCSEIRTLESVIDEAETPITRARTISLDFIHELGWLLHRNRVSQRLGRMDPNLNRFSFERFKWLIKFSMERDWCAVVNKLLGIFFEGRTVSQGEHPSMEFALVEMDLLHRAVQRNCRPMVELLLSFVPTKQSNKPGFDKHRPNNYLFKPDAVGSAGLTPLHIAASCDGYENVLDALTNDPGMVGIKAWKTSRDATGLTPNNYACLRGHFSYIRLVQKKCGKIVESGSVVLEIPNNASKICSLWTESTMKGKEAIGHCRVCEAKSVRGYKSGAFVYRPAMLSMVIIAAVCVCVALLFKSSPDVRCSFRPFRWEALKYGPR 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1727193 1728772 + BLOR18058 Blo07g00126 62650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00126 430 Gene3D - 179 343 IPR036770 -
Blo07g00126 430 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 2 428 - -
Blo07g00126 430 SUPERFAMILY Ankyrin repeat 218 330 IPR036770 -
Blo07g00126 430 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 428 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00126 - - - qsu:111997723 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00126 Blo-Chr7:1727193 Blo10g00099 Blo-Chr10:998605 1.01E-146 dispersed
Blo07g00126 Blo-Chr7:1727193 Blo07g00617 Blo-Chr7:19072362 3.81E-147 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00099 BCT 161 974 SBP-box Gene Family AT2G47070 56.9 2.2e-245 845.5
Blo07g00617 BCT 163 1012 SBP-box Gene Family AT2G47070 54.5 1.4e-239 826.2
Blo07g00126 . 3 428 SBP-box Gene Family AT2G47070 50.1 3.3e-108 389.8
Blo10g00099 BCT 10 974 SBP-box Gene Family AT3G60030 54.8 1.0e-276 949.9
Blo07g00617 BCT 2 1012 SBP-box Gene Family AT3G60030 52.1 2.1e-269 925.6
Blo07g00126 . 3 428 SBP-box Gene Family AT3G60030 50.6 2.5e-102 370.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50570 67.0 4.2e-37 152.5
Blo10g00099 BCT 161 974 SBP-box Gene Family AT2G47070 56.9 2.2e-245 845.5
Blo07g00617 BCT 163 1012 SBP-box Gene Family AT2G47070 54.5 1.4e-239 826.2
Blo07g00126 . 3 428 SBP-box Gene Family AT2G47070 50.1 3.3e-108 389.8
Blo10g00099 BCT 10 974 SBP-box Gene Family AT3G60030 54.8 1.0e-276 949.9
Blo07g00617 BCT 2 1012 SBP-box Gene Family AT3G60030 52.1 2.1e-269 925.6
Blo07g00126 . 3 428 SBP-box Gene Family AT3G60030 50.6 2.5e-102 370.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50570 67.0 4.2e-37 152.5
Blo10g00404 . 959 1058 SBP-box Gene Family AT5G50670 67.0 4.2e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00126 Blo_Chr07 FPKM 49.94743 55.848919 73.126854 68.881271 63.247192 59.018261 58.617966 51.792828 49.2122 52.706413