Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00140 ATGACATATTCAATCATGACCGTCAATCTCTATGAAGGACATCCCTCACTCGATCTAACGGCCATAGATTATCGTATGCCATCGCCTTTGGGAAATGGGAGGGTTGTGGAGCTGCAGTACCACATCGAAAATGGGAGGGTTGTGGAGCTAGTTTATAAGTGGGTACCCATCCTTGGCTCTAAGAACTTTGCAGCCATTTTTGTCTTCGGAGACTCGTTGGTTGATGTTGGAAACAACAATTACATGTTGACTCTATCAAAAGCTGACTATGTTCCGAACGGCATAGATTTCGGAAAGCCAACCGGACGATTCACTAATGGGCGGACGATCATCGACATCATCGGTCAGAAGTTCGGCTATAAACATTTCATCCCTCCGTATCTTGCTCCAACAACCGTTGGCCCGGCAGTCCTCCGAGGGGTCAATTATGCTTCCGGAGGAGGCCGAATTTACAACCTAACCGGCTACATTTTTATTGGTCGCCTCAACATGGATGCACAGATAGACAACTTTGCAAACACAAGGCAAGACATCATTTCAATGATTGGTCTTCCGGCGGCGACGGAGCTGCTGAAAAATTCCCTGTTCTCAGTTACCATGGGCTCCAATGACTTCATCAATAATTACTTGACACCTGTCCTCTCCATCCCCCAGCAGAAGTTGATCTCCCCTCGACTCTTCATTGACCGCATGATTTTGAGATTTAGACTGCAACTAACCAGGCTGTTCTTTCTGGGGGCTAGGAAGATTGTCGTGACAAACGTGGGACCAATTGGGTGCATACCTTATTTGAGGGATATAAATCCAAAAACAGGAACAAAGTGTGTTATTTTTCCAAATCAATTGGCAAGTATGTTCAATTTCAAGTTGAAGAGCTTGGTTAAGGAGCTTAACCGTGATCTAACCGGTTCAATTTTCGTCTATGCCGATGCTTATCGGATTGTCCTAGACATCATCCAAAATCACGAGTTCTACGGCTTTGAGAGTGCTGATACTGCGTGTTGTTACGGTGCGGGGCAATTTGGGGGGCTTGTGGCGTGCGGGGGCCTATCAAGGGTTTGTCGGGATAGATCAAAGTTTGTGTTTTGGGATCCATACCATCCGTCTGATGCTACCAACGTTATCATCACCAATCGTCTTCTTGATGGTAATGACACCGACATTTGGCCTGTCAATATTAAAAGACTCGCTCTGCTTTGA 1200 45.92 MTYSIMTVNLYEGHPSLDLTAIDYRMPSPLGNGRVVELQYHIENGRVVELVYKWVPILGSKNFAAIFVFGDSLVDVGNNNYMLTLSKADYVPNGIDFGKPTGRFTNGRTIIDIIGQKFGYKHFIPPYLAPTTVGPAVLRGVNYASGGGRIYNLTGYIFIGRLNMDAQIDNFANTRQDIISMIGLPAATELLKNSLFSVTMGSNDFINNYLTPVLSIPQQKLISPRLFIDRMILRFRLQLTRLFFLGARKIVVTNVGPIGCIPYLRDINPKTGTKCVIFPNQLASMFNFKLKSLVKELNRDLTGSIFVYADAYRIVLDIIQNHEFYGFESADTACCYGAGQFGGLVACGGLSRVCRDRSKFVFWDPYHPSDATNVIITNRLLDGNDTDIWPVNIKRLALL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1889369 1892021 - BLOR18072 Blo07g00140 62664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00140 399 Pfam GDSL-like Lipase/Acylhydrolase 66 379 IPR001087 GO:0016788
Blo07g00140 399 Gene3D SGNH hydrolase 57 384 IPR036514 -
Blo07g00140 399 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 57 397 - -
Blo07g00140 399 CDD SGNH_plant_lipase_like 65 384 IPR035669 -
Blo07g00140 399 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 57 397 - -
Blo07g00140 399 SUPERFAMILY SGNH hydrolase 65 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00140 - - - twl:120002045 487.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01027 Blo-Chr4:13745781 Blo07g00140 Blo-Chr7:1889369 3.38E-124 dispersed
Blo07g00140 Blo-Chr7:1889369 Blo12g00809 Blo-Chr12:26460626 1.48E-83 dispersed
Blo07g00140 Blo-Chr7:1889369 Blo16g00424 Blo-Chr16:16562720 1.10E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00140 Blo_Chr07 FPKM 32.236084 34.461475 36.992214 37.276413 17.143549 18.610975 22.476917 46.672962 43.128357 53.586445