Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00155 ATGAGTCGAACCCACATCTGGGCATTTCCTAGTCTTCACAGGGCAGACTACCACAATCTCACCCCCTTGGGAACCCGACGTCCTCATCAGCTACACTTTCGGATCTTCTTCGTTTCCGATCGGATTCCGGCAGGCATTTTGTCAATCGACGTGATGTTTCTGGTCGACTGGTTCTATGGAGTTCTCGCATCCCTTGGTCTTTGGCAAAAGGAGGCCAAAATTCTTTTCCTGGGCCTCGACAATGCCGGAAAAACCACCCTCCTTCACATGCTGAAAGACGAGAGACTTGTTCAGCACCAGCCCACGCAGCATCCGACGTCGGAGGAGTTAAGTATTGGGAAAATCAAGTTCAAGGCCTTCGATTTAGGAGGTCACCAGATCGCTCGCCGAGTTTGGAAGGATTACTATGCTAAGGTAGATGCAGTAGTTTACCTTGTTGATGCATATGACAAAGAGAGGTTTGCTGAATCTAAGAAAGAGCTTGATGCTCTCCTTTCAGATGAAGCTTTGGCTGACGTTCCATTTCTCATACTGGGCAACAAAATTGACATCCCTTATGCGGCTTCCGAAGATGAACTGAGATACCATCTTGGCCTGATCAATTTCACAACTGGCAAAGGCAAGAAATCGAGATTGGCGACCACAGCTTTTGTCAAACCTGTAGATGATGAGGAAGATCGAGAGCTGGATCAGACTATTCACAATAGCACCACCTCATCTACCTGGAATGGGACTAATTCCTCTTGTGAGTTGTCAAAGAGCATGATGCCTGTCTCGACAAAGATAAGTCCTCGGTGTCCAGTAGGTGCCCCTGATGACAGCATTGACGGCTATAATTTGGATAACAGAAGTGATGGTTCACGAGAATATGACATGTTGGCAGATAAGTCATTGCACTCTAATCCAAACAAAATGTACAGTGCGGCCTACAGAAGATTGAAGTCGCACAAAAGTAGAACCAGTTTGGAAGTCGACGACGATGCACATCGGAAACAGCCTCGTGTTGATTATGAGAGTAAAGCCAAGCTGTTATCTGCACTAGAGACAATTAACCCTAACCATTCGGGACCAGAGAATTCATGGTTCATGCGTCAAAATAGATTTGATGAGCCCACCAAGAAGAATGATGGGCTTCCAAAAATTGACGGGCCAGCCCACCTGAACAAAGCAACCCCCGACGCCTATCCTTTCAAAGCTTTATATTCCTCCCACCCCCATCTTCATTCTGCGCCACCAACTATCAGCAAGAAAATGCAGCCGAATTGGGTTTTTCTGTTGGCTATGGCCGTCGCAGTGGTGCTCGTCAATGGCAATGAAAACTCGGTGAAGCCATTGATGAAGATAGTGAAGGGGAAGAAGGTGTGTGACAAAGGGGTAGGAGTGTAA 1386 46.97 MSRTHIWAFPSLHRADYHNLTPLGTRRPHQLHFRIFFVSDRIPAGILSIDVMFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHLGLINFTTGKGKKSRLATTAFVKPVDDEEDRELDQTIHNSTTSSTWNGTNSSCELSKSMMPVSTKISPRCPVGAPDDSIDGYNLDNRSDGSREYDMLADKSLHSNPNKMYSAAYRRLKSHKSRTSLEVDDDAHRKQPRVDYESKAKLLSALETINPNHSGPENSWFMRQNRFDEPTKKNDGLPKIDGPAHLNKATPDAYPFKALYSSHPHLHSAPPTISKKMQPNWVFLLAMAVAVVLVNGNENSVKPLMKIVKGKKVCDKGVGV 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2036882 2042688 - BLOR18087 Blo07g00155 62679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00155 461 ProSiteProfiles small GTPase SAR1 family profile. 65 318 - -
Blo07g00155 461 ProSiteProfiles small GTPase Arf family profile. 65 248 - -
Blo07g00155 461 PANTHER RE74312P 52 221 IPR006687 GO:0005525|GO:0006886
Blo07g00155 461 TIGRFAM small_GTP: small GTP-binding protein domain 70 186 IPR005225 GO:0005525
Blo07g00155 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 205 IPR027417 -
Blo07g00155 461 Gene3D - 48 224 IPR027417 -
Blo07g00155 461 CDD Sar1 53 211 - -
Blo07g00155 461 MobiDBLite consensus disorder prediction 260 279 - -
Blo07g00155 461 SMART sar_sub_1 55 255 IPR006689 GO:0003924|GO:0005525
Blo07g00155 461 SMART arf_sub_2 55 222 - -
Blo07g00155 461 PRINTS GTP-binding SAR1 protein signature 101 125 IPR006689 GO:0003924|GO:0005525
Blo07g00155 461 PRINTS GTP-binding SAR1 protein signature 73 96 IPR006689 GO:0003924|GO:0005525
Blo07g00155 461 PRINTS GTP-binding SAR1 protein signature 128 153 IPR006689 GO:0003924|GO:0005525
Blo07g00155 461 PRINTS GTP-binding SAR1 protein signature 173 194 IPR006689 GO:0003924|GO:0005525
Blo07g00155 461 PANTHER BNAA09G15410D PROTEIN 52 221 - -
Blo07g00155 461 Pfam ADP-ribosylation factor family 59 203 IPR006689 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00155 K07953 SAR1; GTP-binding protein SAR1 [EC:3.6.5.-] - tcc:18603615 286.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00053 Blo07g00155 CCT
Blo01g00053 Blo07g00155 ECH
Blo02g00482 Blo07g00155 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00479 Blo-Chr2:7041480 Blo07g00155 Blo-Chr7:2036882 6.03E-27 dispersed
Blo05g00258 Blo-Chr5:2857993 Blo07g00155 Blo-Chr7:2036882 9.17E-99 dispersed
Blo06g00533 Blo-Chr6:27646642 Blo07g00155 Blo-Chr7:2036882 2.10E-105 dispersed
Blo07g00155 Blo-Chr7:2036882 Blo18g00332 Blo-Chr18:3444862 1.18E-22 dispersed
Blo07g00153 Blo-Chr7:1999644 Blo07g00155 Blo-Chr7:2036882 8.39E-44 proximal
Blo07g00155 Blo-Chr7:2036882 Blo07g00156 Blo-Chr7:2043138 2.10E-17 tandem
Blo01g00053 Blo-Chr1:680452 Blo07g00155 Blo-Chr7:2036882 9.78E-103 wgd
Blo02g00482 Blo-Chr2:7159678 Blo07g00155 Blo-Chr7:2036882 1.93E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g91 Blo01g00053 . . Bda08g00312 . . . . Cmo08g01237 Cmo17g00350 . . . . . . . . . . . . . . Cla06g00438 Cam06g0463 Cec06g0469 Cco06g0468 Clacu06g0450 Cmu06g0451 Cre06g1227 . . . . . Csa06g01751 Chy11g01558 . Blo02g00482 Blo07g00155 Bda11g00510 Bda13g00211 Bpe05g00816 Bpe13g00688 Bma02g00924 Bma06g01476 Sed04g1758 . . Cma08g01267 Cma17g00359 Car08g01137 Car17g00332 Cpe12g00312 Cpe17g00058 Bhi12g01915 Tan06g2742 Cmetu11g0059 . . . Lcy12g0791 . . . . . . . Lsi09g01479 . . Cme11g02069
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033562 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00155 Blo_Chr07 FPKM 16.386272 19.451981 9.979931 9.514354 11.501097 12.439622 11.601965 11.5825 10.308643 10.957438