Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00157 ATGAGAGGGCTTTCTTCTCTGACTACCAGGGGGGCAACTCTACTTAGAACCCTACCCCAGGAATCTTCTGCTCAGTCCAATCTTCGGAGACGAATACATTCGAACATCAAACCTCTCGAAGCCGTCGATAAAAGTGTCTTTAGAAACACGCAGGCTGATTCTGAAGGTAATCTTTCCTCATCCAACGCCCCCATTGTAGCTGATAATCACAAATTACGTGATAACCTTATTGACCTGTCATACATATCTAGAATTCTCTCCAGAAAAGACTGGTTTTCATTAATTAAACACGAGCTGAAAGCAGAGAGGATTAAATTGAATACCCAGTTTATTGTTAGAGTTTTGCAAAACCAGGAAAACCCAGTAAACGCTTTGAGATTTTATATATGGGTTTCGAATGTTGATAAGTTATTTTCTAAGAGTCAGCCTATTCGAGGCGCCTTAGCCAGTATTTTCTATCGCAAAGGTCCGGTTGTGCTGTCCGTTGAATTGCTTCAGGAGATTAAAACTTCTGGTCTTCCGGTGACAGAGGAGTTGCTTTGCGTGTTAATTGGAAGTTGGGGAAGATTGGGTTTGGCAAAATATTGCACAGAAGTATTTGGGCAAATATCATTTTTGGGTCATTTTCCAAGTACGCGTTTGTACAATGCTGTTATTGATGCATTTGTAAAATCCAATTCTCTAGATTTGGCTTACTTGAAATTCCAACAGATGCGTACTGACAATTGCACTCCGGATAGATTCACATACAATATACTCATTCATGGAGTTTGTAAGCTAGGCATTGTTGATGAAGGGCTTCGTTTAGTCAAGCAGATGGAGGCTGTTGGGTGTCCACCCAATGTCTATACTTATACAATTCTGATTGATGGATTTTGTAATTCCAAGAGAATAGACGAAGCCTTTGGGATTTTAGAGACGATGAAAGAAAGAAAGGTGGTTCCTAATGCTGCTACTATCAGATCCTTAGTTCATGGAGTGTTTGGTTGCTTGGCTCCAGGTAAGGCTTTTGAGTTCTTATTGGATTTTGCATTGAAAAAGCGTGTCATTTCTAAGTTAGTCTGTAATACTGTACTCTATTGCCTTGCAAATAGTTCCATGGCGAATGAGGCAGCCACATTTTTGAGAAAAGCTGGGGAGAAAGGTTATCTTCCTGATTGTTCAACACTTAATATTGCTATGGCATCCATCGTAAAAAATTTAGACCCGAGAGAAGCATGCACTATATTTGATAGTTTGATACAAAAAGGTGTGAAACCAAGTTTCAATACTTATCTTGCACTGGTTGAAGCAGCATATAAGGCTGGAAACATCGAGGTTGGAGATAGTTATTTGGATCAAATGGTTACGGATAGTCTTTTGTCCGATGTATTTTCATGTAATATGGTCATAGATTGCCTATGCAAGACCAAAAGGATGGATAAAGCATCAGAAATATTCGGGGAACTGATCAGGGGCTTTTCCCCTAGTCTTGTTACTTTTAATACCCTTATTGCTGGGTATTGTAAGGAAGGGGATGTAAAAAGGGCTAAGGAACTGTTGAAATTGTTAATAAAGCATGGTTTTATGCCTGATATATTCACATTTAATTCAATAATCGATGGCCTTTGTCGAGCCCGCCAGCTCGAATATGCTTTTGATTGTTTCGCAGAAATGGTGGAGTGGGATGTTAGACCAGATACCATAACTTATAATATATTGATCCGTTCTTTGTGTTTGGTTGGATATTACAAAAGGTCCGTAGAACTATACAAAAAAATGCAATTAGACGGTATAAGCCCGGATACTTTCTCTTTTAATTCTCTCATCCAATATTTTTGCTTCACAAATAAGATTCAGAAGGCCAAGAAGCTTTTTAAGTCCATGTTGAGAAGGGGGTTGAAGCCGGACTGTTTTACATACAGTGCTTTTATCAAGGCTTTGTGTGAATGCGGGAGACTTGCCGAAGCCAAGGAACTGTTCGCCTTAATGGAAGTGAATGGTTTCAAATTTGATTCTTACATATCTAATCTAATTTCAGATACTTCAGTTGAACAATCTCGGTTTAATGCGGTACAGCTTATGCCAGAGCCATCACAGCCAACTCTCCTGCAATTTTCTCAGCTTCATCAATGGCTTCCATTAGGCTCTCAGTTTCATCTCCGATTCTTCTCTGCCTCCTCATTTCTTGCTGCAAAATGGGTATTTCATTTCTCGTCTCTTCTGCAGATAATCTCAAATTTATCAAACCTTTCTGGAATAAAATCCCTCCAATGGTTCTTCATTTCAGGAAAAGCAAACGCACAAACTGGAACTGCAGGCTTTTCTGGGCCTTCTCAGATCATAACAAAGGCGCTGCTTTGTTTCAACGACAATTACGTCTACAAGAGCTGTGATGAGTCTTACAGGCTGAACGAAAGTGGAGATCTGAATATTCCATTTGACCAAACAGACGCATATTGTGAGGGTCCATGCCTGGCAGAGACTCACCTCGTTCTGGACTGCATTGACAACATTTTGAGCAACTTTCTGTTTTTCAATCAGGCTACTATCAACGATATTCGAGCGACGATCCATGCCGGCTGCGGCTTCGGCCCCGGAAGAGGTTTTGGCCGCCAAGAAATTATAGCATATTTGAGAATATCATCGCCTTTGAATTTCTACAAACATGGAAAACATAATTGTTTTGTTCTTCATGCAGGCGACTTCAATGTGGCAGAGCACATCGCAGCTGAGGAAGACAATGCACATATGACTTCGAAAAACTACATTATTTTACAAGTACTTGGATTGATGTCGATCGGATTATGTTCCGTTCTTTGA 2802 40.11 MRGLSSLTTRGATLLRTLPQESSAQSNLRRRIHSNIKPLEAVDKSVFRNTQADSEGNLSSSNAPIVADNHKLRDNLIDLSYISRILSRKDWFSLIKHELKAERIKLNTQFIVRVLQNQENPVNALRFYIWVSNVDKLFSKSQPIRGALASIFYRKGPVVLSVELLQEIKTSGLPVTEELLCVLIGSWGRLGLAKYCTEVFGQISFLGHFPSTRLYNAVIDAFVKSNSLDLAYLKFQQMRTDNCTPDRFTYNILIHGVCKLGIVDEGLRLVKQMEAVGCPPNVYTYTILIDGFCNSKRIDEAFGILETMKERKVVPNAATIRSLVHGVFGCLAPGKAFEFLLDFALKKRVISKLVCNTVLYCLANSSMANEAATFLRKAGEKGYLPDCSTLNIAMASIVKNLDPREACTIFDSLIQKGVKPSFNTYLALVEAAYKAGNIEVGDSYLDQMVTDSLLSDVFSCNMVIDCLCKTKRMDKASEIFGELIRGFSPSLVTFNTLIAGYCKEGDVKRAKELLKLLIKHGFMPDIFTFNSIIDGLCRARQLEYAFDCFAEMVEWDVRPDTITYNILIRSLCLVGYYKRSVELYKKMQLDGISPDTFSFNSLIQYFCFTNKIQKAKKLFKSMLRRGLKPDCFTYSAFIKALCECGRLAEAKELFALMEVNGFKFDSYISNLISDTSVEQSRFNAVQLMPEPSQPTLLQFSQLHQWLPLGSQFHLRFFSASSFLAAKWVFHFSSLLQIISNLSNLSGIKSLQWFFISGKANAQTGTAGFSGPSQIITKALLCFNDNYVYKSCDESYRLNESGDLNIPFDQTDAYCEGPCLAETHLVLDCIDNILSNFLFFNQATINDIRATIHAGCGFGPGRGFGRQEIIAYLRISSPLNFYKHGKHNCFVLHAGDFNVAEHIAAEEDNAHMTSKNYIILQVLGLMSIGLCSVL 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2046997 2051594 + BLOR18089 Blo07g00157 62681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Blo07g00157 933 PANTHER OS12G0557800 PROTEIN 48 687 - -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Blo07g00157 933 Pfam PPR repeat 215 243 IPR002885 -
Blo07g00157 933 Gene3D Tetratricopeptide repeat domain 347 451 IPR011990 GO:0005515
Blo07g00157 933 Pfam PPR repeat 485 515 IPR002885 -
Blo07g00157 933 Gene3D Tetratricopeptide repeat domain 202 274 IPR011990 GO:0005515
Blo07g00157 933 Gene3D Tetratricopeptide repeat domain 588 661 IPR011990 GO:0005515
Blo07g00157 933 Gene3D Tetratricopeptide repeat domain 452 516 IPR011990 GO:0005515
Blo07g00157 933 Gene3D Tetratricopeptide repeat domain 275 346 IPR011990 GO:0005515
Blo07g00157 933 Gene3D Tetratricopeptide repeat domain 517 587 IPR011990 GO:0005515
Blo07g00157 933 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 48 687 - -
Blo07g00157 933 Pfam PPR repeat family 594 642 IPR002885 -
Blo07g00157 933 Pfam PPR repeat family 524 572 IPR002885 -
Blo07g00157 933 Pfam PPR repeat family 250 294 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 486 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 527 561 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 562 596 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 632 665 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 214 246 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 597 631 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 458 487 IPR002885 -
Blo07g00157 933 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Blo07g00157 933 SUPERFAMILY HCP-like 367 558 - -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Blo07g00157 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00157 - - - qsu:111988150 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00157 Blo-Chr7:2046997 Blo01g00039 Blo-Chr1:539773 4.91E-29 dispersed
Blo07g00157 Blo-Chr7:2046997 Blo01g01128 Blo-Chr1:40657966 4.85E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g101 . . . . . . . . Cmo08g01233 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01756 Chy11g01554 . . Blo07g00157 . . . . . Bma06g01479 Sed04g4010 . . Cma08g01263 . Car08g01133 . . Cpe17g00054 Bhi12g01908 Tan06g2736 Cmetu11g1056 . . . . . . . . . . . Lsi09g01473 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008186 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 3 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00157 Blo_Chr07 FPKM 2.98307 3.191912 1.151733 1.297425 2.689658 2.786121 2.570385 1.16642 1.088062 1.129632