Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00158 ATGTCGTTGAGACCCAATGCCAGGACTGAGGTTCGTCGGAACCGCTACAAGGTCGCCGTCGATGCCGAAGAGGGTCGCCGGAGAAGGGAGGATAATATGGTCGAAATACGCAAAAGCAAACGCGAAGAAAGCTTGCAGAAGAAGCGCCGTGAAGGTCTTCAGGCTCAGCAGTTACCTAACGCTGCACAGGCTTCAGCCGTTGAGAAGAAGTTAGAGAGCCTTCCTTCAATGGTTGCTGGGGTCTGGTCTGACATCAGTAGCTTGCAGCTGGAGGCGACAACGCAGTTTCGGAAATTGCTTTCCCTTGAACGAAGCCCTCCAATTGAGGAAGTTATTCAATCTGGGGTTGTTCCTCGATTTGTGGAGTTTCTTGTCAGGGAGGATTTTCCGCAGATTCAGTTTGAGGCTGCTTGGGCTCTCACGAACATAGCCTCTGGCACGTCAGAGAATACAAAGGTGGTAATTGACCATGGAGCAGTTCCTATCTTCATAAAGCTCCTTGGTTCTTCAAGTGACGATGTCCGAGAGCAGGCAGTTTGGGCGTTGGGAAATGTTGCTGGCGATTCTCCTCAATGCCGTGATCTTGTCCTTGGCCATGGAGCCTTGATTCCTCTATTAGCTCAATTGAACGAGCGTGCTAAACTTTCTATGTTGAGAAATGCTACATGGACACTATCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAGCCAGCACTTCCGGCTCTTGAGCGTCTTGTTCACTCAAATGATGAAGAAGTCCTGACTGATGCTTGCTGGGCGCTTTCATATCTTTCTGATGGAACTAATGATAAAATTCAAGCGGTTATTGATGCGGGTGTTTGTCCCCAACTTGGGCAGCTACTCCTACATCCATCTCCTTCTGTACTTATTCCCGCATTACGTACAGTGGGAAATATTGTGACTGGTGATGATGCTCAGACTCAGAACAGATGTCTTGCAATTCTTGTTGTTATGCTAATTATCACTTTATCAGCATGTATTATGGTCTGTTTTCTGTGTATAATAATATTTAATTGGATAATTAACAATGGTGCACTACTGTGCCTTCTGAGCCTTTTAACCCACAATCATAAAAAGAGCATAAAGAAGGAAGCATGTTGGACGATCTCAAATATTACTGCTGGAAACAGAGAACAGATACAGTGTGTAATTGAAGCTGGGTTAGTTCCTCCTTTAGTTAATTTGCTTCAAAATGCCGAGTTTGATATAAAGAAAGAGGCTGCATGGGCAATTTCGAATGCAACATCTGGTGGTACTCATGAGCAAATTAAATATCTGGTCAATCAAGGATGTATAAAACCATTATGTGATCTTCTTGTATGCCCTGATCCAAGGATTGTCACAGTCTGTTTGGAAGGGTTAGAGAATATTTTAAAGGTTGGGGAAGCTGAGAAGGCTTTGGATAGCGCAGGAGATGTGAATTTCTATGCCCAGTTGATTGATGATGCTGAGGGTTTAGAGAAGATTGAAAATCTTCAGAGTCATGATAACAATGAGATTTACGAGAAGGCAGTCAAACTCCTCGAAACATACTGGTTGGAGGAGGAAGACGAGACACTAGCCGCAACTGAAGGTGGTAATCGGGTTGATGTTGATGATGAAGATGATGAGATGCCATATTTTGTGGTTCATGGGGGTCAAGTTAACTTCGATGAACTGTTACAACCTGTGATTGTTTTGGTTGCATCTTATCTGGGCTTCGCTCGATCTCGTAATTTCTTGTGTACAAGTGTGGATCCAACTGTAAAAGGATCGGGCTCTGAGGAGATGAATGGGCAGAACCAAAGCGGAGCTTCGTCGGAGGAAAGCCAAGTGAACGAGCAGAACAAGAAAACCTGCGCCGACTGTGGAACAACCAAGACCCCATTATGGAGAGGCGGTCCGGCTGGGCCTAAGTCATTATGCAATGCGTGCGGTATCAGAAGCAGGAAGAAGAGAAGAGCGTTTTTGGGTTTAAACAAAGGGAGTACAGAAGACAGGAAGAACAAGAAAAACAACAACAATGGCAGCGGGAACAGTAACAAGGTGGGTGATAGCTTGAAACAGAGGCTATTGGAGTTGGGTAGAGAAGTTTTGATGCAGAGATCAACAATGGAGAAGCAGGGGAGTAAATTAGGGGAGGAAGAACAAGCTGCTGTGCTGTTAATGGCTCTATCTTATGGCTCTGTTTATGCTTAG 2214 45.08 MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQLPNAAQASAVEKKLESLPSMVAGVWSDISSLQLEATTQFRKLLSLERSPPIEEVIQSGVVPRFVEFLVREDFPQIQFEAAWALTNIASGTSENTKVVIDHGAVPIFIKLLGSSSDDVREQAVWALGNVAGDSPQCRDLVLGHGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCPQLGQLLLHPSPSVLIPALRTVGNIVTGDDAQTQNRCLAILVVMLIITLSACIMVCFLCIIIFNWIINNGALLCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQCVIEAGLVPPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKALDSAGDVNFYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKLLETYWLEEEDETLAATEGGNRVDVDDEDDEMPYFVVHGGQVNFDELLQPVIVLVASYLGFARSRNFLCTSVDPTVKGSGSEEMNGQNQSGASSEESQVNEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAFLGLNKGSTEDRKNKKNNNNGSGNSNKVGDSLKQRLLELGREVLMQRSTMEKQGSKLGEEEQAAVLLMALSYGSVYA 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2056960 2064268 + BLOR18090 Blo07g00158 62682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00158 737 Gene3D - 11 50 IPR036975 GO:0006606
Blo07g00158 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 427 IPR000225 GO:0005515
Blo07g00158 737 CDD ZnF_GATA 624 659 IPR000679 GO:0006355|GO:0043565
Blo07g00158 737 ProSiteProfiles GATA-type zinc finger domain profile. 619 655 IPR000679 GO:0006355|GO:0043565
Blo07g00158 737 SUPERFAMILY ARM repeat 6 529 IPR016024 -
Blo07g00158 737 MobiDBLite consensus disorder prediction 595 625 - -
Blo07g00158 737 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 618 659 - -
Blo07g00158 737 Gene3D - 619 684 IPR013088 GO:0006355|GO:0008270
Blo07g00158 737 ProSitePatterns GATA-type zinc finger domain. 625 650 IPR000679 GO:0006355|GO:0043565
Blo07g00158 737 Gene3D - 72 525 IPR011989 -
Blo07g00158 737 PANTHER IMPORTIN SUBUNIT ALPHA 350 539 - -
Blo07g00158 737 PANTHER IMPORTIN SUBUNIT ALPHA 2 321 - -
Blo07g00158 737 PANTHER IMPORTIN ALPHA 2 321 - -
Blo07g00158 737 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Blo07g00158 737 Pfam GATA zinc finger 625 659 IPR000679 GO:0006355|GO:0043565
Blo07g00158 737 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Blo07g00158 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Blo07g00158 737 MobiDBLite consensus disorder prediction 661 690 - -
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 147 186 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 189 230 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 351 386 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 432 469 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 388 427 IPR000225 GO:0005515
Blo07g00158 737 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Blo07g00158 737 MobiDBLite consensus disorder prediction 663 677 - -
Blo07g00158 737 Pfam Atypical Arm repeat 488 531 IPR032413 -
Blo07g00158 737 PANTHER IMPORTIN ALPHA 350 539 - -
Blo07g00158 737 SMART GATA_3 619 683 IPR000679 GO:0006355|GO:0043565
Blo07g00158 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Blo07g00158 737 MobiDBLite consensus disorder prediction 39 61 - -
Blo07g00158 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 352 386 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 232 271 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 104 145 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 388 428 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 431 471 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 273 313 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 147 187 IPR000225 GO:0005515
Blo07g00158 737 SMART arm_5 189 230 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00158 K15042 KPNA5_6; importin subunit alpha-6/7 - vvi:100248248 901.353
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00486 Blo07g00158 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00487 Blo-Chr2:7278721 Blo07g00158 Blo-Chr7:2056960 2.28E-75 dispersed
Blo06g00299 Blo-Chr6:16686477 Blo07g00158 Blo-Chr7:2056960 4.09E-06 dispersed
Blo07g00158 Blo-Chr7:2056960 Blo11g00528 Blo-Chr11:4880766 2.51E-16 dispersed
Blo12g01014 Blo-Chr12:28084532 Blo07g00158 Blo-Chr7:2056960 1.85E-17 transposed
Blo01g00058 Blo-Chr1:740520 Blo07g00158 Blo-Chr7:2056960 1.59E-33 wgd
Blo02g00486 Blo-Chr2:7272777 Blo07g00158 Blo-Chr7:2056960 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12575 PF01749 IBB 2.20E-23 CL0020 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00158 Blo_Chr07 FPKM 1.355082 0.39403 0.0 0.644161 0.0 0.0 0.0 0.75303 0.500348 0.983122