Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00162 ATGAACTTGGTTGAATTTTTGGAAATTATACTCCTCGACGAGATTTCTGTGTGTAATGACTTTTCTCCTGAATTGCAGAAACCAAGAATCACAGAGATACAGGTCCGGATGGACTGTAATGGCTGCGTTCAGAAGATCAAGAAAGCTTTGACCGGCATCAATGGTATTTATGATCTCTACATAGATTTTCCGCAGCAAAAGTTGACGATAATTGGGCGGGCAGATCCAGAAAAGATAATCAAAGCCATTAAAAAGACCAGGAAGATCGCCACCATTTGTTCCCACACTGAGCAAACTTCAGACCCTCCCCAACAAGCACCCACAGAAGGAAGCCCGCCGGCTTCTGAAGCAACAAATCAAACAGATGGTCGGAAACAGGAGACATCTCCTGCGCCAGCGCCAGCGCCAGCGACGGCCCCAGCCCCTGCGCCAGCGACAGCGCCAGCGCCAGCGCCAGCGCCAGAACCACCAAAAGACCCACCACCTCCGCCGGCGGAAAATCCACAGCCGGCACCATCTCCATCACCGTCTCCGGTGGCTACAGCTACTAACCATCCAAACCAGCCAGCAAAAACCTCCGAACCAAAAGAAATCGAAGAAGTCCACGTAATACACCACCACCCCCCGGACTACGGCTACCGGTACGGCGGCTATGGTGGACAATGCAACAAATACCATAATTCGGCCGGAGAAGGATTTCAACATGAACTACCATCCCCGCCAATCTACGTGACACATAGCTACAACACTTACAAGGCCTCACCCTGCGTAACCCAATACGAGTACGTCCGACCATCTCCCATAATCTCAGAATTCGAATATCTACGGTCACCGGAAAATCCATCTTATTACAGTAGGACGAATCGCTACAGTGAAGAATACAGCAACGGAAACGGCGGAAATGGTAACATTACCTCAATTTTCAGCGACGAGAACCCAAATGCATGCAAAATTATGTAG 960 49.69 MNLVEFLEIILLDEISVCNDFSPELQKPRITEIQVRMDCNGCVQKIKKALTGINGIYDLYIDFPQQKLTIIGRADPEKIIKAIKKTRKIATICSHTEQTSDPPQQAPTEGSPPASEATNQTDGRKQETSPAPAPAPATAPAPAPATAPAPAPAPEPPKDPPPPPAENPQPAPSPSPSPVATATNHPNQPAKTSEPKEIEEVHVIHHHPPDYGYRYGGYGGQCNKYHNSAGEGFQHELPSPPIYVTHSYNTYKASPCVTQYEYVRPSPIISEFEYLRSPENPSYYSRTNRYSEEYSNGNGGNGNITSIFSDENPNACKIM 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2093301 2094342 + BLOR18094 Blo07g00162 62686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00162 319 MobiDBLite consensus disorder prediction 133 179 - -
Blo07g00162 319 Pfam Heavy-metal-associated domain 33 86 IPR006121 GO:0046872
Blo07g00162 319 ProSiteProfiles Heavy-metal-associated domain profile. 37 92 IPR006121 GO:0046872
Blo07g00162 319 MobiDBLite consensus disorder prediction 94 196 - -
Blo07g00162 319 MobiDBLite consensus disorder prediction 94 127 - -
Blo07g00162 319 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 23 319 IPR045181 GO:0046872
Blo07g00162 319 CDD HMA 32 91 IPR006121 GO:0046872
Blo07g00162 319 PANTHER OJ1116_C07.8 PROTEIN 23 319 - -
Blo07g00162 319 Gene3D - 29 92 - -
Blo07g00162 319 SUPERFAMILY HMA, heavy metal-associated domain 29 88 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00162 - - - vvi:100263762 231.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00490 Blo07g00162 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00162 Blo-Chr7:2093301 Blo17g00206 Blo-Chr17:2065724 4.55E-12 dispersed
Blo02g00490 Blo-Chr2:7315880 Blo07g00162 Blo-Chr7:2093301 5.15E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00162 Blo_Chr07 FPKM 0.905983 0.84268 2.847376 4.744804 3.471934 4.053094 3.056885 3.814542 3.868736 3.836817