Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00188 ATGGCGTCCGCTGATAAACCAGACCCAGAACCTATTCCACAGGAACCTGCAGTTCCATCTTCTTCTTATTCTCCTCCAGCTTCGAAGGTGTTTTCCGTGGATGTGGTTCTGAGATTGCTTGTGTTTGCCGCTTCTCTTACGAGTGTTTTGTTGGTTGTGACGAGCAAGCAGACCAAGACCAGTGGTGTGAGAAATGTTCCAACAGGATTCCGTGTGGAAGCCAAATTTAGTCATTCACCTTCCTTGATATATTTTGTAGCAGCCTTATCTGTTGCTGGGTTTTACAGTCTCATCACAGCACTTGCTTCCATTTCTTTCGTCTTCAAATCTAACGTCTCCCCCAAATTCTTGATTCATTTTGCCTTCCTTGACGTTTTGGTGTTGGGATTGGTCGCCTCGGCCACGGGCACGGCAGGCGGGGTGGCATACATAGGATTGAAGGGAAACAATCACGTTATGTGGGTCAAAATTTGCTATGCTTTCGATAAGTTTTGTCGATACGTCGGCAGCGCAATTCTCATCTCGTTGTTCGCTTCCGTTCTTCTTGTATTCCTCGTTTGGTTGTCTCTTTTTTCTGTCCGCCCCAAGTTAAAACGCGGTGTCACCGCGTTTTTACGCGAGGCACCGCGTTTTTACCCGGTGACAGTGCCTTTAAATTCCATCTACACAGATCGAGCAGATCCAAATCTGGATCTGGCGATCTGCGAGACCCGCGACGACGAGAGTACGAAGCTGCGACGCGACGACGAGAGTTCGAAGCTGCGACGCGATGGGATGGCGACTGCGACGCGACGGGTTGGCTACGACGAGTTGGCGAGTGCGACTGCGATTTGCGACGACGAGTTGGCGAGTGCGATTTCTCAACTGATTCCGATAGTTTCATTAGTTTTGTTGCTTTGCATTACAGATTTGCATTACAGAGATTGTGGTACAGATAGTTTCATTATAGATAGTTTCATTGATTTGCATTACAGATTTGATCCCCTGTTGGCTAATTACTCAGGGAGCACAATGGACCGAGCTAGGAAATTCATGCAGAAGCGTGGGAGGAGAAGGGAGGAGGCTAGTGAAAGACGAGCAACCGAGGCAGTGGAAGCCGCGTGGGGTGAATATGTTCATCATGAGGCGGTTGAAGAAGTTGAACAAGCAACGACGGTGGAAGACGAAGACACCGCCGAGCCTGAACAAGGAGAAACAGAGTTATTATTCAGTACAGACGATGCCAGAAGATGGTATGAAGAAGATGTTGAACACCGTGGCATTATTGTTTCCAAAATAGTCGATTTTGACTCTTTCACGGAAATGGGCATTCAACATATGCTGGAAAATCCTGGATTACTCGGGTTGTGTCGGATGGGGGGCACTTATTGCGAGAGAGTCATTAAGATGTTTTACGCAAATTTCCAACTTTCTGAGGAGCCAGTTGAGGTGCAAACCTATATTTTTGGACGGGAGTTGAGATTCACTCCTTACCATATCAATACAATACTTGAATGTTATGGGGCAAGCGAGGAATATTATGGCATAGCTAAGACGAAGCCACCATTTATCAAGGAAGGAGATGGGCTAGCCGTTCTTAGATTGTTGCACAAGGATCCTGAGATTGCCCATTACAAGAGGCCAAAGGCTAATGAGTTGAATGTAATGGCCCGAGTAATCCACATGATATTGACGTACACAATTTTGCCTAGGATTGGGCATCGAGACCATGTTACAAGCATGGAACTGTATATTTTGGAGAAGGTGTTCAGGGAAAAAAAAGTGAACATTGGATATATCATAGCGAAGCACATGGAAGAGGTCGTCAACAACCCATCAATGAGCCTACCGTACAATTGGCTTATCCAGACTATATTTGAGCAGTTTGGGGTTCCCATTTTTGCGAATGAGCCAAGAATTGAAGCGACGACCACTGACACCTACAAAAGAGCCAACTTGGATCGATTGGGCATCACCCAAGTTGATGGCGGATGGTTCCGCAAGTCCAAACAGAAGGCAGCACCTCCACCCATTACTGAGCCTCAGTATGCAGGCACCTCTTATGATATGTCGCCTTCTCCCCACTTAGAGCCTGAGTATGCGTATGTAGCCCCTGAATATGAAATGCCACCTCCTCCACAATCATCACACTTTACTGCGATGCCTGAGGAGTCGTCTGCCTGGATGAGCAGAATGGAGGAGCTCCATCATGCGTCGATGACCAGAATGCAAATGATGGAGGAGCACGTGCAAAGGCAACAAATCAAGCTACAAAGAGCTAACGAGCTCGCAACAGAGAGGTGGGCCATTGCCCAACAGTGGCAGGTGGAAGAATCAGAGAGCAGACGCGCCGCAGAGCAGTGGCGTATGCAAGAGGCGGAGCTCGCTGAAGCGAGGCATAAAGAAGTTGAACAGTGGCATCTTCAAGAGGCGGACCTCGCAGCAGAGAGGTATCGCCAATCCGAACAATGGCATGTTCGAGAAGAGGAGCAACATATTCGAGAAGAGCAGCGACACCGTGAGGTGTTGGCCACACTTAAGAGACGTGGGAGGCGATTAGCCCGATCATCATCCTCGTCATCGCCCAATGACGCACCTGATGCCACATTCCGCCTTGACCCTGTCAATCGCCGCCAAGGATCACCTGGAGCGGGGGCGCTCCAACCTCTGCCCAGAAGAGTTGTGCGCGTACCTGTGTCGGTCATGTCCTCGTTCAAGATATATGTCCAGACAAATACCCGTTACAACAAGGAGACGTGCGCAATTCTTGGGGGAAAGTTGGAGGGCGAACATTACGTTGTCTCACATCTCATCTTTCCGGAACAAGAAGGGACGCCAAATACGTGTATTGCGAGCAATGAAGAAGCCATATTGGCATTTCATCAGTCAAAGAATCTATTGCAATTAGGGTGGATTCACACACACCCAAAACAAGGGTTGTTTATGTCCTCCGTTGACTTGCACACCCAATATGGGTACCAGCGATTGTTGTGGGAGTCCATCTCTATCAATGTAACTCCATTAGACAAAAAGACGCCGTACGGCATCTTTCGGCTTACAGAAGAAGGGATGTTGGTGATGTCCAGCTGCAGAAATGAAAAACACTTCCACGAGCACGAACGTGAAATCTTTAAGTATAAGGGTGAGTTATACGGTGCTGCAGACGGGGTTCTATTGGACCCGAACGGAAGTTGTCTTTTAGAGGATTTGCACCCGCCTCAGCCACGGCCACCGCCCTGGTCCAGAAAGAAGGCGCCATAA 3240 48.43 MASADKPDPEPIPQEPAVPSSSYSPPASKVFSVDVVLRLLVFAASLTSVLLVVTSKQTKTSGVRNVPTGFRVEAKFSHSPSLIYFVAALSVAGFYSLITALASISFVFKSNVSPKFLIHFAFLDVLVLGLVASATGTAGGVAYIGLKGNNHVMWVKICYAFDKFCRYVGSAILISLFASVLLVFLVWLSLFSVRPKLKRGVTAFLREAPRFYPVTVPLNSIYTDRADPNLDLAICETRDDESTKLRRDDESSKLRRDGMATATRRVGYDELASATAICDDELASAISQLIPIVSLVLLLCITDLHYRDCGTDSFIIDSFIDLHYRFDPLLANYSGSTMDRARKFMQKRGRRREEASERRATEAVEAAWGEYVHHEAVEEVEQATTVEDEDTAEPEQGETELLFSTDDARRWYEEDVEHRGIIVSKIVDFDSFTEMGIQHMLENPGLLGLCRMGGTYCERVIKMFYANFQLSEEPVEVQTYIFGRELRFTPYHINTILECYGASEEYYGIAKTKPPFIKEGDGLAVLRLLHKDPEIAHYKRPKANELNVMARVIHMILTYTILPRIGHRDHVTSMELYILEKVFREKKVNIGYIIAKHMEEVVNNPSMSLPYNWLIQTIFEQFGVPIFANEPRIEATTTDTYKRANLDRLGITQVDGGWFRKSKQKAAPPPITEPQYAGTSYDMSPSPHLEPEYAYVAPEYEMPPPPQSSHFTAMPEESSAWMSRMEELHHASMTRMQMMEEHVQRQQIKLQRANELATERWAIAQQWQVEESESRRAAEQWRMQEAELAEARHKEVEQWHLQEADLAAERYRQSEQWHVREEEQHIREEQRHREVLATLKRRGRRLARSSSSSSPNDAPDATFRLDPVNRRQGSPGAGALQPLPRRVVRVPVSVMSSFKIYVQTNTRYNKETCAILGGKLEGEHYVVSHLIFPEQEGTPNTCIASNEEAILAFHQSKNLLQLGWIHTHPKQGLFMSSVDLHTQYGYQRLLWESISINVTPLDKKTPYGIFRLTEEGMLVMSSCRNEKHFHEHEREIFKYKGELYGAADGVLLDPNGSCLLEDLHPPQPRPPPWSRKKAP 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2347045 2354449 + BLOR18120 Blo07g00188 62712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00188 1079 Pfam Putative plant transposon protein 451 625 IPR046796 -
Blo07g00188 1079 SUPERFAMILY JAB1/MPN domain 900 1016 - -
Blo07g00188 1079 MobiDBLite consensus disorder prediction 839 882 - -
Blo07g00188 1079 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 891 989 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo07g00188 1079 Coils Coil 736 756 - -
Blo07g00188 1079 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 30 193 - -
Blo07g00188 1079 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 35 192 IPR006459 -
Blo07g00188 1079 MobiDBLite consensus disorder prediction 1 26 - -
Blo07g00188 1079 Gene3D Cytidine Deaminase, domain 2 878 1062 - -
Blo07g00188 1079 PANTHER CASP-LIKE PROTEIN 1D1 30 193 - -
Blo07g00188 1079 Pfam Casparian strip membrane protein domain 29 181 IPR006702 -
Blo07g00188 1079 ProSiteProfiles MPN domain profile. 887 1016 IPR037518 -
Blo07g00188 1079 SMART pad1_6 886 1015 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00188 - - - qsu:112031941 194.126
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00582 Blo07g00188 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00824 Blo-Chr1:12908647 Blo07g00188 Blo-Chr7:2347045 0 dispersed
Blo01g00825 Blo-Chr1:12910440 Blo07g00188 Blo-Chr7:2347045 0 dispersed
Blo02g00582 Blo-Chr2:10687045 Blo07g00188 Blo-Chr7:2347045 4.50E-62 dispersed
Blo04g01294 Blo-Chr4:27434920 Blo07g00188 Blo-Chr7:2347045 0 dispersed
Blo05g00082 Blo-Chr5:808950 Blo07g00188 Blo-Chr7:2347045 2.81E-08 dispersed
Blo07g00188 Blo-Chr7:2347045 Blo12g00769 Blo-Chr12:26056221 0 dispersed
Blo08g00421 Blo-Chr8:8281642 Blo07g00188 Blo-Chr7:2347045 5.50E-122 dispersed
Blo12g00490 Blo-Chr12:22682393 Blo07g00188 Blo-Chr7:2347045 3.63E-178 dispersed
Blo13g00366 Blo-Chr13:21305915 Blo07g00188 Blo-Chr7:2347045 1.34E-11 dispersed
Blo15g00429 Blo-Chr15:6172089 Blo07g00188 Blo-Chr7:2347045 0 dispersed
Blo07g00187 Blo-Chr7:2340018 Blo07g00188 Blo-Chr7:2347045 2.19E-22 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g355 . . . . . Bpe14g01370 . . . . . . . Car14g01471 Sed02g1219 . Cpe03g01386 Bhi01g00952 Tan10g0952 Cmetu06g1565 . . . Lcy11g1451 . . . . . . . Cone14ag0782 . Cone7ag0174 Cone4ag0172 Lsi05g01504 . . . Blo02g00582 Blo07g00188 Bda11g00540 Bda13g00164 . Bpe13g00649 . . . . Cmo14g01685 . . . . . . . . . . . . . Cla05g00615 Cam05g0677 Cec05g0687 Cco05g0682 Clacu05g0671 Cmu05g0639 Cre05g0711 . Csa03g01416 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000313 0 0 105 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00188 Blo_Chr07 FPKM 7.986111 7.807137 25.241825 24.226355 2.417955 1.335982 1.678712 125.310364 125.859749 109.988571