Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00193 ATGGAACCACCTCCAGATGGTGTTCGCCGCCCCAAAGTTGCAGAAATGGATGTTCAACCATCGTTGACCGAAGATCCCTCCGCCGCTTTATGGGACTTCGGAGACCTCCTTGACTTCGCTGTCGACGATCGGTTTTCTATTTCGATCGATAACCATGACTTGTCGGTTAGCATTACCGAGCATGAGATCCCGGCAGAGACGTCGGTTTCAGATAGGATTCGGAAAAGGGATCCGAGGTTGACCTGTTCCAATTTTTTGGCCGGTGTTGTTCCCTGCGCGTGCCCGGAGATCGATGAGAAGCTTGAGGAGGAAGAGGGCGCGCCTGGTAAGAAACGAAGTCGGAAGGCTCGTTCGGTGGGTGGAGCGGCTCGGTGCCAGGTCCCTGGGTGCGAGGCAGATATCAGGGAACTTAAAGGTTATCATCGAAGGCATAAGGTTTGTCTGCGTTGCGCAAATGCAACTACTGTTATAATCGATGGTGAGACTAAGAGATACTGCCAGCAATGTGGCAAGTTTCACATTTTGTCAGACTTTGACGAAGGTAAAAGAAGCTGTAGAAGAAAATTAGAGCGCCACAACAATCGACGCCGAAGGAAACAGACAGATTCTATAGTTGCAATGGAAGATGAATCCCAAGCAGGCATGCGGCGTGACAATGTCACGCCTGATTGTGAAGCTGGAAAAGATAGTTTGTGTTTTAATAATAAAATAGTCGATGAGGAAGCTTTGCAAGAGACTGATGAGGGACAAGCTACAACAACATGCTCAGCTCTTGACTCTCAAAACATTCGTAGTGATAGTGGTCTATCCTTTTTGAATCCCCGTGAAACCCCAGTGGACCAAGAAAAAGATAGTTCAAAATATTCTGTGTCTCCTCCATATCATGAGAATAAAAGTGCTTATTCTTCTATGTGCCCAACAGGACGAATATCATTCAAGCTTTATGACTGGAATCCTGCAGAATTTCCTAGACGACTTAGGCTTCAAATATTCCAATGGTTAGCCAATATGCCAGTCGAGCTGGAGGGATATATCCGACCTGGATGTACAATTTTGACTGTGTTCATTGCGATGCCAAAGTTTATGTGGGCAAAGTTACTTGAAGATCCTGTGACACACCTGCATAACTTTGTTGCTTCACCTGGAAGGATGCTGTCAGGAAGAGGCAATATGCATATCTATTTAAACAACATGATTTTTCGCGTGATTGAAGGTGGGAACTCTGTGATGAAAGTCAAAGTGGAAGTTCGGGCTCCAAAACTTCATTATATCCATCCTTCATACTTTGAGGCCGGCAAGCCCATGGAATTTGTGGCTTGTGGAAGTAACTTGCATCAACCCAAACTTCGGTTTCTCATTTCTTTTGGTGGAAAATATCTAGCGTGTGACTATTGTAGTACCTGGCTAGACAGTCAAAATGGAGGGGATTCAAAGTTTACCGAAGACTATCAGCTGTACAAAATATATATTTCTCATACTGAACCCAATCTTTTTGGTCCTGCATTTGTTGAGGTGGAGAATCAATCAGGCTTGTCTAACTTTATACCGATTCTGGTTGGTGATAAGGAAACTTGTTTTGAAATGAGGAAAATAGAAAAGAGACTTGATAGACCTCTCTTTTCGGAATCATGTCATCATTTGTCTAAATCACGTGAAGAATTTTATATCATGAAACGAGAGTTATATTCAGAAATTATCACAGATATATCATGGTTACTTAGAAAGCATGCATCAAAAAACTCACAACAGGTTATGAGTGCATCACAGCTTCAAATGTATGCCCGTGTGTTGAAGTTTTTGACTCAAAATGAGTCAACAGTCATTTTGGAGAGAGTCCTTGAAAACATAAAAAGATTGATGGACAAGAGAGATCGAAATGGGGCTTTCAATGGCTTTTATGATGGTAACATAAGGTCATTTCAAAAATATATGGATAGTGCAAAGGAATTTCTTGTTCAAAATTGTCAAGTAGTTGGCAATTCCGTGCTGCATTTGGGACGTGGCGAGTCTACGGAGGAAATCCTTTCTCAATGCTACTCCGAAAACAAAACGATTTCAGCTACTGTTATCAAAATGGGTATGGAGGGAAGATCAAATGGTGATTGTGGAGCAATGGCAGGTTCTATGTCTTTCAATAGAAGTGAAGTTGCTCCTCTCTTGAACAAGGAGGTTGTCGTGGATGTGACTGATTTGGTGATATCGCAGTCTCGATCCACAGGTGCTTCTTATCAACGCTTAATGTCGAATAATGCCTTTTTATCCTGA 2265 42.65 MEPPPDGVRRPKVAEMDVQPSLTEDPSAALWDFGDLLDFAVDDRFSISIDNHDLSVSITEHEIPAETSVSDRIRKRDPRLTCSNFLAGVVPCACPEIDEKLEEEEGAPGKKRSRKARSVGGAARCQVPGCEADIRELKGYHRRHKVCLRCANATTVIIDGETKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKQTDSIVAMEDESQAGMRRDNVTPDCEAGKDSLCFNNKIVDEEALQETDEGQATTTCSALDSQNIRSDSGLSFLNPRETPVDQEKDSSKYSVSPPYHENKSAYSSMCPTGRISFKLYDWNPAEFPRRLRLQIFQWLANMPVELEGYIRPGCTILTVFIAMPKFMWAKLLEDPVTHLHNFVASPGRMLSGRGNMHIYLNNMIFRVIEGGNSVMKVKVEVRAPKLHYIHPSYFEAGKPMEFVACGSNLHQPKLRFLISFGGKYLACDYCSTWLDSQNGGDSKFTEDYQLYKIYISHTEPNLFGPAFVEVENQSGLSNFIPILVGDKETCFEMRKIEKRLDRPLFSESCHHLSKSREEFYIMKRELYSEIITDISWLLRKHASKNSQQVMSASQLQMYARVLKFLTQNESTVILERVLENIKRLMDKRDRNGAFNGFYDGNIRSFQKYMDSAKEFLVQNCQVVGNSVLHLGRGESTEEILSQCYSENKTISATVIKMGMEGRSNGDCGAMAGSMSFNRSEVAPLLNKEVVVDVTDLVISQSRSTGASYQRLMSNNAFLS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2401303 2407047 + BLOR18125 Blo07g00193 62717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00193 754 MobiDBLite consensus disorder prediction 196 219 - -
Blo07g00193 754 MobiDBLite consensus disorder prediction 284 298 - -
Blo07g00193 754 MobiDBLite consensus disorder prediction 190 219 - -
Blo07g00193 754 Pfam SBP domain 125 199 IPR004333 GO:0003677
Blo07g00193 754 Gene3D - 120 186 IPR036893 GO:0003677|GO:0005634
Blo07g00193 754 MobiDBLite consensus disorder prediction 1 21 - -
Blo07g00193 754 MobiDBLite consensus disorder prediction 266 298 - -
Blo07g00193 754 SUPERFAMILY SBT domain 123 204 IPR036893 GO:0003677|GO:0005634
Blo07g00193 754 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 26 739 IPR044817 GO:0003677
Blo07g00193 754 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 26 739 - -
Blo07g00193 754 ProSiteProfiles Zinc finger SBP-type profile. 122 199 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00193 - - - cmos:111457700 809.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00570 Blo07g00193 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00193 Blo-Chr7:2401303 Blo10g00099 Blo-Chr10:998605 2.26E-22 dispersed
Blo02g00570 Blo-Chr2:10502934 Blo07g00193 Blo-Chr7:2401303 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g384 . . . . . Bpe14g01158 . . . . Cma06g01455 Cma14g01651 Car06g01257 Car14g01485 . Cpe08g00222 Cpe03g01395 . . . . . . . . . . . . . . . . Cone7ag0187 Cone4ag0183 Lsi05g01490 . . Cme06g00679 Blo02g00570 Blo07g00193 Bda11g00547 . . Bpe13g00642 . Bma06g01524 . Cmo06g01456 Cmo14g01695 . . . . . . Bhi12g02132 . . . . . Lcy13g0944 Cla05g00605 Cam05g0666 Cec05g0675 Cco05g0670 Clacu05g0660 Cmu05g0629 Cre05g0698 . Csa03g01404 Chy06g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004916 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12580 PF03110 SBP 1.50E-27 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00193 Blo_Chr07 FPKM 7.302839 7.396601 23.204315 23.783966 347.556366 396.033905 350.487549 10.054742 10.942186 10.349742