Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00198 ATGGGAGGGCTCAGAGCTTCAGCGACTGCGAGACCGCAGACTGCGATTGCGAAAGAGAGCGAGCAAGAAAATGAAACTCATTTTTTCTCTAATTGGGAACCGAGACCGTACCGGAACTGGACTGGAACCGCAGGCCGGTTTTGGTACTGGCGTCCTGGTACTGGAGAATATGATAAATTCTTTGAAGAAGGAGTTTATCATTGTGCAGGCTGTAAAACACCCCTTTACAAATCAACTACCAAATTCAATTCTGGCTGTGGTTGGCCTGCTTTTTACGAGGGCTTCCCCGGAGCCATAAATCGAACTCCTGATCCTGATGGTAGGAGAACTGAGATAACATGTGCTGCTTGTGGTGGGCATTTGGGTCATGTTTTCAAAGGCGAGGGGTTTAAGACGCCAACTAATGAACGCCACTGCGTTAATAGCGTCTCGATCAACTTAAAAATGGCTTCAATGGTTGCCAAGCCCAGTTGTAATAACAGTGCCCATGTTTCTTCTTCATTGACTGTCCAAGAAATCGGAAGTAGAAACAAGAGGAAATTTCGGGCTGATCCACCTTTAGGTGACTTGAATAAGATGAATCCCTCATCTCAAAAGGAATGCTCTAGCTATGAGTTTTCGGCAGAGAAATTCGAAGTAATCTCAAGTCATGGGCACCCTAGTGCTTGTGATCTATGTAGTGTTCGCCAAGATCATTTTGATGGATTTAAACTTGATTTTGGATTACCCAATGGTGAAAATCCAATTGATGTCAACCCTAGGTGGCCTAGAGAGGACTTGGAGACAGATGAATTCCAAGATGCTGATTGGAGTGATTTTACTGAAGCTGAGCTGGAAGAACTTGTTTTAATTAATTTAAGCACCATTTTCAAGGGTGCAATTAAGAAAATTGTTGCTTGTGGTTACACTGAAGAAGCTGCAACAAAAGCTGTCTCAAGGTCTGGCATCTGTTATGGTTGTAAAGACACTGTGTCAAATATAGTCGATAATGGCTTGGCGGTTCTTAAAAGTGGGCAGGACATTGATTATTCAAGGGAACATCTCTTCGAAGATCTACAGCAACTGGAGAAATATATACTTGCAGAAATGGTTTGTGTTCTTCGAGAGGTTAGACCATTCTTCAGCAATGGGGATGCTATGTGGTGCTTATTAATCTGTGACATGAATGTGTCTCATGCATGTGCAGCGGATGGTGATTTTTTTGGTACTTTGGTCACTGATGGCAATTCACCCACTCCTCAGGTGATGAAGAGCTCTGAGAATTCTAGTAAGACAAATCTTCCTATCACATGTACACATAGCCCTCAATCTGAAGGCGCCAGATTTTCAAAAAATTCTAAGTCAAAGAATTCGCTTGTTAATAGTGGAAAGACAATGGATGAAGACGACATTAATTCCACATCCGATAGTGTGGCCAACAAACATTTTAGTGCAGTGGGCTCGTCTTCATTTGCATCAGAAGGAAAGATTGGGAGCAGCAAAAAGTTTCAATCTAACACTGCAAAAAGGGAGTATATACTTCGACAGAAATCACTTCATATGGAGAAAAACTATCGAACCTATGGATCTAAGGGATCTTTAAGAACAGGGAAGCTGAGTGGCATGGGTAGTATGATCTTGGATAAGAAATTAAAGGCTGTTTCTCGCTCTACATCAATAAATATAAAGAGCTCTTCGTTAAAAATAAGCGAGGCTAATGGAATTGATGTTGGTCAAGATAATGAAAACCATAATCTATCAACAGACGCTTTGTCCTCATCTCATGTAGTATCAAACTTGGGAAGTCTTGATACCATTCCTGATTTTCATAAGAAAAATATACAATCTGAAACTGAGATTTTACCATCGTTAGCAGCTGCTGATACTGAACTTTCTCTTTCTTTGCCAACAAAATGTGATACTGCTTCATTGCCCATTAGCTGCAATGAAGCTTCTAATGTTGGTCATGCTGGGAGGCAATTTGACAAGTCTCTTGGGCGGTGGGTTCCTCGTGAAAAGAAAGATGAGATGATTCTAAAGCTGGTTCCTAGAGTGCGAGAACTACAAACTCAGCTCCAAGAATGGACTGAGTGGGCCAATCAAAAGGTTATGCAAGCTGCTCGTAGACTCGGTAAGGATAAGACTGAACTTAAGACTCTAAGACAAGAGAAAGAAGAAGTTGAAAGGCTAAAAAAAGAGAAGCAAACTCTGGAGGAAAATACAATGAAAAAGTTTTCGGAAATGGAAAATGCGTTGTGCAAGACTAGTGGGCAGGTTGAATTAGCTAATTCTGCAGTTCGTAGGCTTGAGATAGAGAATGTTTCACTGAGGCGAGAGATGGAGGATGCAAAATTACGTGCCACAGAATCTGCTGCTAACTGCCAGGAGGTATCAAAGAGAGAGAAGAAGACCCTAATGAAATTTAAATTTTGGGAAAAACAGAAAACTGTGTTGCAGGAAGAACTTGTGGCTGAAAAACGCATATTAACGCAGCTGTTACTTGAACTAGAAGAAGCTAGCAATCTCCAGGAGCAGCAGGAGGCGAAATGGAAACTTGAAGAGCAAGCCCGGCTTCAACTAGTTATACAAGCAACTTCGATAAGAAAGGAAAGAGAACAAATCGAGGCTTCGGTGGAAGCAAAGCAAGACGTAATCAGACTGAAAGCCGAAAACAATCTTCAAAAGTACAAAGACGATATCCAAAAGCTCGAAAAAGAAATTTCCCAGCTGAGACGGAAGAGCGATTCTTCGAGAATTGCGGCCCTGAAAAGAGGAATCGATGGAAGCTATGCCAGCGTACTTTCCGATTCCAGAAATACCCCCGATCACAAGGAGACTCGGGACCGTAAATTGGCTTCGTCGATGAATAATCTCCAACCCCAATCGGGAACGGGATTGGTAAAACGAGAACACGAGTGTGTGATGTGCCTTACAGAGGAGATGTCTGTGGTTTTTTTGCCGTGTGCTCACCAGGTGGTTTGTACAACCTGCAATGAACTTCACGAAAAGCAGGGAATGAAGGATTGCCCTTCGTGTCGGAGCCCCATACAGCAGCGAATATCTATTGGCGGGAGATTTGTGATTGAGCAAGCGACGCCTCGGGGGATGCGCAAGAATTTAAGCGGAGCTTTAAACCCTGGTGAGCATGGCGTTAGTATTCTGGCGTTGATCCATTCCGTCGGACGATTGAAACGGCGGAGAGTTGAGGAAGAGTTTGGGATGGAGAGCTATGTTCAAGAAAAGTACTGGGATATATGCGGGGTGGAGATCACTGATTATTCAGTTGAGGTGAATCAACGTCCTTTCAAGTGGAGTACGGCCTTTCTTCTGGGCAATGAGGTGTAA 3324 42.96 MGGLRASATARPQTAIAKESEQENETHFFSNWEPRPYRNWTGTAGRFWYWRPGTGEYDKFFEEGVYHCAGCKTPLYKSTTKFNSGCGWPAFYEGFPGAINRTPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTNERHCVNSVSINLKMASMVAKPSCNNSAHVSSSLTVQEIGSRNKRKFRADPPLGDLNKMNPSSQKECSSYEFSAEKFEVISSHGHPSACDLCSVRQDHFDGFKLDFGLPNGENPIDVNPRWPREDLETDEFQDADWSDFTEAELEELVLINLSTIFKGAIKKIVACGYTEEAATKAVSRSGICYGCKDTVSNIVDNGLAVLKSGQDIDYSREHLFEDLQQLEKYILAEMVCVLREVRPFFSNGDAMWCLLICDMNVSHACAADGDFFGTLVTDGNSPTPQVMKSSENSSKTNLPITCTHSPQSEGARFSKNSKSKNSLVNSGKTMDEDDINSTSDSVANKHFSAVGSSSFASEGKIGSSKKFQSNTAKREYILRQKSLHMEKNYRTYGSKGSLRTGKLSGMGSMILDKKLKAVSRSTSINIKSSSLKISEANGIDVGQDNENHNLSTDALSSSHVVSNLGSLDTIPDFHKKNIQSETEILPSLAAADTELSLSLPTKCDTASLPISCNEASNVGHAGRQFDKSLGRWVPREKKDEMILKLVPRVRELQTQLQEWTEWANQKVMQAARRLGKDKTELKTLRQEKEEVERLKKEKQTLEENTMKKFSEMENALCKTSGQVELANSAVRRLEIENVSLRREMEDAKLRATESAANCQEVSKREKKTLMKFKFWEKQKTVLQEELVAEKRILTQLLLELEEASNLQEQQEAKWKLEEQARLQLVIQATSIRKEREQIEASVEAKQDVIRLKAENNLQKYKDDIQKLEKEISQLRRKSDSSRIAALKRGIDGSYASVLSDSRNTPDHKETRDRKLASSMNNLQPQSGTGLVKREHECVMCLTEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQQRISIGGRFVIEQATPRGMRKNLSGALNPGEHGVSILALIHSVGRLKRRRVEEEFGMESYVQEKYWDICGVEITDYSVEVNQRPFKWSTAFLLGNEV 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2445082 2460380 - BLOR18130 Blo07g00198 62722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00198 1107 MobiDBLite consensus disorder prediction 925 956 - -
Blo07g00198 1107 Pfam Family of unknown function (DUF6592) 286 396 IPR046527 -
Blo07g00198 1107 Pfam SelR domain 51 148 IPR002579 GO:0033743
Blo07g00198 1107 SUPERFAMILY RING/U-box 962 1012 - -
Blo07g00198 1107 Coils Coil 752 779 - -
Blo07g00198 1107 MobiDBLite consensus disorder prediction 434 468 - -
Blo07g00198 1107 Coils Coil 703 740 - -
Blo07g00198 1107 Coils Coil 812 842 - -
Blo07g00198 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 1015 IPR013083 -
Blo07g00198 1107 MobiDBLite consensus disorder prediction 1 23 - -
Blo07g00198 1107 Gene3D Peptide methionine sulfoxide reductase. 37 147 - -
Blo07g00198 1107 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 35 150 IPR002579 GO:0033743
Blo07g00198 1107 MobiDBLite consensus disorder prediction 434 461 - -
Blo07g00198 1107 Pfam Zinc finger, C3HC4 type (RING finger) 963 1011 - -
Blo07g00198 1107 PANTHER OS05G0141500 PROTEIN 157 1015 IPR046934 -
Blo07g00198 1107 SUPERFAMILY Mss4-like 51 151 IPR011057 -
Blo07g00198 1107 ProSiteProfiles Zinc finger RING-type profile. 966 1006 IPR001841 -
Blo07g00198 1107 Coils Coil 879 913 - -
Blo07g00198 1107 PANTHER OS05G0141500 PROTEIN 157 1015 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00198 - - - qsu:112009955 1087.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00198 Blo-Chr7:2445082 Blo02g00628 Blo-Chr2:13285889 9.41E-06 dispersed
Blo01g00892 Blo-Chr1:17925690 Blo07g00198 Blo-Chr7:2445082 1.98E-55 transposed
Blo02g00565 Blo-Chr2:10337223 Blo07g00198 Blo-Chr7:2445082 2.82E-10 transposed
Blo03g00117 Blo-Chr3:3531532 Blo07g00198 Blo-Chr7:2445082 4.09E-10 transposed
Blo19g00050 Blo-Chr19:1242177 Blo07g00198 Blo-Chr7:2445082 3.92E-21 transposed
Blo02g00564 Blo-Chr2:10297073 Blo07g00198 Blo-Chr7:2445082 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g399 . . . . . . . . . . . Cma14g01662 . Car14g01495 Sed02g1286 . Cpe03g01403 Bhi01g00887 Tan10g0913 Cmetu06g0354 . Hepe05g1503 . Lcy11g1478 . . . . . . . . Cone15ag0804 . . Lsi05g01475 . . Cme06g00666 . Blo07g00198 Bda11g00551 . . Bpe13g00634 . Bma06g01530 . . Cmo14g01706 . . . . . . . . . . . . . Cla05g00595 Cam05g0655 Cec05g0663 Cco05g0659 Clacu05g0648 Cmu05g0617 Cre05g0685 . Csa03g01391 Chy06g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00198 Blo_Chr07 FPKM 0.0 0.0 0.0 0.0 6.822209 6.128469 7.375306 0.0 0.0 0.0