Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00240 ATGATCGAAGTGGGACCAAAAACAGTGGACTACTGCGCAGAGAAATGGGGTAAAAAAGCAGCGATTTTTGGATCAGTTTCGATGGAAAACAGAATGAGGGTTGGTTTACACTACGTTTCCGCCATTTTTCTGTGTCTCTTCTGTTGCCTTCATCTTCTCCAGAGCTCTAATGGGTTGCTAGACACCCAAGGCTACACCTGCGAACCTAACCAGACCACCAGATCTTGCCAAACCTACGTCTTCTACCGAGCCACCGCCCCTAATTTCCTCGATTTAGCCTCCATAGCCGACCTTTTCTGGGTCAGTCGGCTCCAGATTTCCCACCCTAGCAACATCTCCGACCCTTCTGCTCCACTTCTCCCCGACCAGCCTCTCTTTGTCCCGATAACCTGTTCCTGCAACTCCGTCAACGATTCCACTAGCCTGTCTTATGCGAATCTCTCTTTCACGATCAAGAAAAACGACACTTTCTACCTCGTCTCCACAAATAATTTTCAAAATCTCACAACCTACCAGTCCGTCGAGGTTGTGAATCCAACTCTCAACCCCAACAATCTTTCAATCGGCGTTAACGTAATTTTCCCAATCTTCTGCAAATGTCCCAACTTCACTCAATCGCGAAATCGAGCCAATTTCCTCGTTTCCTACTTGTTTCAACCTTCTGATAACTTCTCCTCAGTCGGTTCAAGGTTTGGGGTCCAAACCCAGTCTATAATCGAAGTTAATGGGAATAACAGTCAACCTTTCGACACCATTTTCATACCAGTCAATCAGCTCCCGAATCTTACGCAGCCCATCGGAGTTCCCTCCTCTTCTCCGGGGGCAACGACTGAGAGAAAAGGGGTAATTACCGGATTAGCGATTGGGGAGGGAATTACTGTTTGTTTGCTTCTTTTTGTACTTGGACTGTGGATTAATGGTGTGTTTTTGAGGAAGAAGAAAAGGGAGGTAGGAGAAGGGGAAAGTCTGAAATCGCAGGTGAATCATGAAGGTAAAGCGAAGGGGATGAGGAAAGAAATGGAGATGAATTTGATGGCTGATGTTTCAGACTGTTTGGATAAATACAGAGTGTTTGGGATTGAAGAACTAAATCAAGCTACTGATGGGTTCAGTGAGAAGAGCTTGATTCAAGGCTCTGTTTATAAAGGGTGTATTAATGGAGAATTCTTTGCCATAAAGAAGATGAAGTGGAATGCCTATGAAGAGCTGAAGATCTTGCAGAAGGTAAACCATGGAAATCTGGTGAAGCTAGACGGATTTTGTGTAGACCCAGAAGACGCGAGCTGCTACCTAATCTACGAGTTTGTCGAAAATGGTTCTCTTTATTCCTGGTTACATGAAGACCAGAGACCAAAACTGAGTTGGAAAAGCAGATTAAGAATCGCCATTGACATAGCTAACGGCCTGCAATACATTCACGAGCACACGAGACCAAAAGTCGTCCACAAAGACATAAAAAGCAGCAATATTCTATTGGACGGAACCATGAGAGCCAAAATTGCCAACTTTGGACTAGCGAAGTCGGGCTGCAATGCCATTACGATGCATATCGTCGGAACTCAAGGCTACATTGCCCCGGAATACATTGCTGACGGGGTTGTCTCAACGAAAATGGATGTTTTCTCATTTGGGGTCGTTTTGTTGGAGCTTATTTCGGGGAGGGAAGCCATTGATGAAGATGGGAGTGTGCTGTGGATAAAAGCTGGAAGAATTTTGGAAGGGAAGAGGGATGAGAAGGTGGAGAGGATAAAGAGGTGGGTGGATGAGATTCTGTTGGAGCAGGGATTGGCGGAGAGCTTGATAGATGTAATTGAAGTAGCCATTGCTTGCATTCAGAAAGAACCTTCGAAGCGGCCGAGCATGGTGGAAATCGTCTACGCATTGTGCAAAAACGACGCAGATCTGTTCGATGTTTCTGGGGATGGATTTTCGGCTTCCCCGATGGCGACCAGTGCTCGTGATAGCATCTCCCGACAAAGTCGAATAAAACAGAAGGATTCCCATATTCGCCGCTCCAACAAACACTGGAAGCTTGCTAATGATCACCGCGCGCACTCAAATATTTGCGGAGCTCGGCCGTTGATGAATTTGAGCGGAATTTCGGTTTGCGTCGACGAAGGCAGTGGAAGTTGCGGGGATGAAGGCGAGAAAAAGACGGCGGCCGGAAGAGCACAAATCACGCAAGCGAAGGAGCAGGAATGGCCCAAATGCAAGAATAAGAACCAGGCTTGGGTTTCGGCCCACGGAAATGAATCAGTCCAACTACATGACTAG 2274 46.53 MIEVGPKTVDYCAEKWGKKAAIFGSVSMENRMRVGLHYVSAIFLCLFCCLHLLQSSNGLLDTQGYTCEPNQTTRSCQTYVFYRATAPNFLDLASIADLFWVSRLQISHPSNISDPSAPLLPDQPLFVPITCSCNSVNDSTSLSYANLSFTIKKNDTFYLVSTNNFQNLTTYQSVEVVNPTLNPNNLSIGVNVIFPIFCKCPNFTQSRNRANFLVSYLFQPSDNFSSVGSRFGVQTQSIIEVNGNNSQPFDTIFIPVNQLPNLTQPIGVPSSSPGATTERKGVITGLAIGEGITVCLLLFVLGLWINGVFLRKKKREVGEGESLKSQVNHEGKAKGMRKEMEMNLMADVSDCLDKYRVFGIEELNQATDGFSEKSLIQGSVYKGCINGEFFAIKKMKWNAYEELKILQKVNHGNLVKLDGFCVDPEDASCYLIYEFVENGSLYSWLHEDQRPKLSWKSRLRIAIDIANGLQYIHEHTRPKVVHKDIKSSNILLDGTMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDVFSFGVVLLELISGREAIDEDGSVLWIKAGRILEGKRDEKVERIKRWVDEILLEQGLAESLIDVIEVAIACIQKEPSKRPSMVEIVYALCKNDADLFDVSGDGFSASPMATSARDSISRQSRIKQKDSHIRRSNKHWKLANDHRAHSNICGARPLMNLSGISVCVDEGSGSCGDEGEKKTAAGRAQITQAKEQEWPKCKNKNQAWVSAHGNESVQLHD 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2995040 2997837 + BLOR18172 Blo07g00240 62764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00240 757 Pfam Protein kinase domain 378 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo07g00240 757 PANTHER - 49 645 - -
Blo07g00240 757 MobiDBLite consensus disorder prediction 722 757 - -
Blo07g00240 757 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Blo07g00240 757 Gene3D Transferase(Phosphotransferase) domain 1 436 639 - -
Blo07g00240 757 MobiDBLite consensus disorder prediction 743 757 - -
Blo07g00240 757 ProSiteProfiles Protein kinase domain profile. 311 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo07g00240 757 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 49 645 - -
Blo07g00240 757 Gene3D Phosphorylase Kinase; domain 1 340 435 - -
Blo07g00240 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Blo07g00240 757 SMART serkin_6 370 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00240 - - - fve:101294699 844.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00600 Blo07g00240 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01014 Blo-Chr4:13287812 Blo07g00240 Blo-Chr7:2995040 8.99E-103 dispersed
Blo07g00240 Blo-Chr7:2995040 Blo11g00624 Blo-Chr11:6363919 1.88E-63 dispersed
Blo06g01158 Blo-Chr6:34986663 Blo07g00240 Blo-Chr7:2995040 5.12E-08 transposed
Blo18g00186 Blo-Chr18:1792128 Blo07g00240 Blo-Chr7:2995040 2.07E-08 transposed
Blo02g00600 Blo-Chr2:11649838 Blo07g00240 Blo-Chr7:2995040 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84370 PF00069 Pkinase 4.90E-40 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00240 Blo_Chr07 FPKM 27.129667 28.042309 1.148481 0.570225 12.260161 11.198556 12.305005 2.226046 2.884466 2.886009