Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00261 ATGAGCGACGCATTGAGAAGAGACTACCAAGTTCACGAAGAGATCGGCCGGGGGCGATTCGGCGTTGTTTTCCGCTGTACCTCTGTGATTTCCGGCGATTCCTTCGCCGTGAAGTCTATGGATAAGCGAATCGTCTCGGCCGGAGATTCACTCGACGCGCAATGCCTTTCGACGGAGCCGAGAATCCTCCAACTTCTATCTCCCCACCCTTACATTCTTTCTCTTCATGATCTCTACGAGGACGATTCTGACCTCCATATGGTCGTCGATCTCTGCTCTACCTCTGATCTCTTTCACCGAGTCACGCTCCGGCTCGTCTCCGAGTCTTTTGCCGCATCCGTCATCTCACAGCTCATGCAAGCTGTTTCTCACTGTCACCGCCTCGGAATTGCCCACCGTGATATCAAGCCTGATAATATTCTGTTCGATGAGAGGGATGACGTGAAGCTTGCTGATTTCGGATCGGCGGAGTTTTTCGAGCAAGGACAAGAGTCCATGAGCGGGATCGTGGGAACGCCTTACTACGTGGCGCCTGAGGTGCTTTCAGGAAGAAATTACGGCGAGAAGGTAGACGTTTGGAGCGCCGGCGTTGTTTTGTACGTTATGCTGGCCGGATTTCCTCCTTTTTACGGAGATTCCGCGGTCGAGATCTTTCAGGCTGTGCTCAGAGCGAACCTGAGATTTCCGCCTAGGGTTTTCCAATCCGTTTCGCCTGCCGCCAAGGATCTGCTTCGGAGGATGCTCTGTAAGGACGTCTCCAAAAGATTCTCTGCCGACCAAGTGCTGAGTAAGTTTTCTGGATTTTCTTTAATTATTCCCCCGGATGCCTCTTTCGTTTTTCTTCCTTAA 849 51.83 MSDALRRDYQVHEEIGRGRFGVVFRCTSVISGDSFAVKSMDKRIVSAGDSLDAQCLSTEPRILQLLSPHPYILSLHDLYEDDSDLHMVVDLCSTSDLFHRVTLRLVSESFAASVISQLMQAVSHCHRLGIAHRDIKPDNILFDERDDVKLADFGSAEFFEQGQESMSGIVGTPYYVAPEVLSGRNYGEKVDVWSAGVVLYVMLAGFPPFYGDSAVEIFQAVLRANLRFPPRVFQSVSPAAKDLLRRMLCKDVSKRFSADQVLSKFSGFSLIIPPDASFVFLP 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3163090 3163938 - BLOR18193 Blo07g00261 62785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00261 282 SMART serkin_6 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo07g00261 282 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 264 - -
Blo07g00261 282 PIRSF ILK 2 273 - -
Blo07g00261 282 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 3 264 - -
Blo07g00261 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Blo07g00261 282 CDD STKc_CAMK 8 263 - -
Blo07g00261 282 Gene3D Transferase(Phosphotransferase) domain 1 2 268 - -
Blo07g00261 282 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Blo07g00261 282 ProSiteProfiles Protein kinase domain profile. 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo07g00261 282 SUPERFAMILY Protein kinase-like (PK-like) 6 270 IPR011009 -
Blo07g00261 282 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00261 - - K08794 mnt:21404279 405.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00261 Blo-Chr7:3163090 Blo12g00582 Blo-Chr12:24124715 2.22E-66 dispersed
Blo07g00261 Blo-Chr7:3163090 Blo07g00432 Blo-Chr7:8590163 6.15E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g702 . . . . . Bpe14g01252 . . . . Cma06g01327 Cma14g01812 Car06g01140 Car14g01625 . Cpe08g00333 Cpe03g01516 . . . . . . . . . . . . . . . . Cone7ag0322 Cone4ag0328 Lsi05g01729 . . Cme06g00496 . Blo07g00261 . Bda13g00065 . . Bma02g00785 . . Cmo06g01331 Cmo14g01850 . . . . . . . . . . . . . Cla05g00447 . . . . . . . Csa03g01212 Chy06g00475 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001788 1 1 1 1 2 1 4 2 1 2 2 2 4 2 2 3 2 3 4 2 2 2 2 1 4 2 2 2 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84371 PF00069 Pkinase 2.80E-67 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00261 Blo_Chr07 FPKM 3.188575 3.681903 1.833962 2.12854 3.552238 4.6848 4.529669 1.04046 1.08837 1.295599