Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00262 ATGGGTAGTGGAAATAAGACCATAATTTGGTTTAGGAGAGATCTCAGACTTGAGGACAATCCTGCCTTAGCTGCTGCTGCTAAGGATGGCTGTGTTCTTCCCGTCTATATCTGGTGTCCTAAAGAAGAAGGGCAATTCTACCCAGGCCGAGTCTCGAGATGGTGGCTTAAACAGTCTCTAACTCACTTGCAGCAGTCATTGAAATCGCTCGGTGCTCAACTGGTTCCGATGAAAACCAAGAGTACTTATTCTGCTCTGGTCAATTGTATCAATGCCATTGGGGCAAAAAGAGTAGTGTTTAACCGCCTTTACGATCCTGTTTCGGTCGCTCGAGACCACAACATTAAACAAAAACTAGCAGAACTTGGTATCTCTGTGGAAACCTACAATGCAGATCTACTGTATGAACCATGGGAAGTTTATGATGAAAAAGGCCATGCCTTTACGACCTTCGATGCATATTGGGAAAGGTGCTTGTCGATGCAGAAGGAACCTGGTTCGAGTCTTCCTCCATTGAAATTGGTTCCAGCCGAAGGGGAGTTGAAAGAATGTTCTGTTGAGGAACTGGGTCTTGAAGATGAGTCGGAAAAATCTAGTAACGACTTACTGAGCAGAGCTTGGTCTCCCGGATGGAGCAATGCCGATAAGGCTCTCACGGAATTTGTGGGACATCATTTGCAAGACTATTCGAAGAATATGGTGGAAGTTGGAGGGAGCCCCACCTCACTTTTATCTCCCTATCTTCACTTTGGAGAAGTGTCTGTCAGAAAAATCTATCAGATGGTGAGAATGAAGCAAATATTATGGATAAGAGAAGGAAACTCAGGAGCTGAAGAGAGTGTGACTCTTTATCTCAGGGCAATTGGGCTTAGGGAGTATTCAAGGCATTTATGCTTCAACTTCCCTTTCACACATGAGAGACCACTACTGAGTAACTTAAAATTCTTTCCTTGGGATGCCAATCAAACCCATTTTAAGACTTGGAGACAGGGTCGGACGGGATATCCGTTAGTCGATGCCGGGATGAGAGAGCTATGGGCCACTGGTTGGGTACACAACAAAATAAGAGTCATTGTTTCTAGTTTTGCAGTGAAAGTCTTGCTTCTTCCATGGAAATGGGGTATGAAGTATTTTTGGGACACCCTTTTGGATGCCGATTTGGAAAGTGATATTCTTGGTTGGCAGTATATTTCGGGTAGCTTATCGGATGGCCACGACCTCGATCGACTGGACAGTCCTCAGATTCAAGGCTACAAACTTGATCCCGAGGGAGAATACGTGAGGCACTGGGTACCCGAACTAGCGCGATTGCCCACTGAGTGGATTCATCATCCATGGGAGGCACCTCCATCCTTGCTTAGAGCTTCTGGGGTGGAGCTGGGTATAAACTATCCAAAACCTATAATTGATATTGATTTGGCCAGACAGAATTTGACAGAAGCTAAATTCAAAATGTGGGAAGTAGAATCTACATCAAAAGCTGCAAACTCAAATGCTCTGACGGAAATCGTTGTGGATAATTCGGACAGCTTTGAAAATCAAGCTATTCCGAAGGTTGTCTTGATTTGTCCTTCGAATTCATCCAACGATCAAAGGGTGCCGAGCTTTCGAAACGTTGGAAACAATACTGTTACACGGAAGCGAATGAAAGCTTTGGATGAAGAGAAGATGAATGGGATGCCAAGAATAGAGGAAGACTTATGCTCTACAGCAGAATCTTCATCAGCCAAGAAACAAACTACCTCGAGAACTTCATTTGCTGTTCCTCAATTTTCGACGTCAAAAGAGCATACCTTCTCGGACTGTGAATCGTCTGACTTGAAGGTAGTCTTCGAGGTGATGGATCTCCACGCTCGGGAATTCAGGATAAGACGTAGGCCATCTCGAAAAAGGAAGCGCATCTATACGACAGAAATAGAAAGTCAGAAAGTATTCGCAAATAGTTCTGAGTTTAGATTCTCTCCGGAAAGGACTGTTAATCGTAGAATATTGAGTTCATCAAGGCGGACTGCACTGCAAATATTGGCTAGTGCAATGGAGGTTGTAAATCAAGTTGTAAGATTAAAATTGCTTAATCTTTTTCATGTTCTTCTGTTTTCTTTGAAGCCAGAGATGGAAAGGGAAAATGGGGTCAAACAGTTAATTAATCAAGGTGTTAAAATCTAA 2166 43.49 MGSGNKTIIWFRRDLRLEDNPALAAAAKDGCVLPVYIWCPKEEGQFYPGRVSRWWLKQSLTHLQQSLKSLGAQLVPMKTKSTYSALVNCINAIGAKRVVFNRLYDPVSVARDHNIKQKLAELGISVETYNADLLYEPWEVYDEKGHAFTTFDAYWERCLSMQKEPGSSLPPLKLVPAEGELKECSVEELGLEDESEKSSNDLLSRAWSPGWSNADKALTEFVGHHLQDYSKNMVEVGGSPTSLLSPYLHFGEVSVRKIYQMVRMKQILWIREGNSGAEESVTLYLRAIGLREYSRHLCFNFPFTHERPLLSNLKFFPWDANQTHFKTWRQGRTGYPLVDAGMRELWATGWVHNKIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLSDGHDLDRLDSPQIQGYKLDPEGEYVRHWVPELARLPTEWIHHPWEAPPSLLRASGVELGINYPKPIIDIDLARQNLTEAKFKMWEVESTSKAANSNALTEIVVDNSDSFENQAIPKVVLICPSNSSNDQRVPSFRNVGNNTVTRKRMKALDEEKMNGMPRIEEDLCSTAESSSAKKQTTSRTSFAVPQFSTSKEHTFSDCESSDLKVVFEVMDLHAREFRIRRRPSRKRKRIYTTEIESQKVFANSSEFRFSPERTVNRRILSSSRRTALQILASAMEVVNQVVRLKLLNLFHVLLFSLKPEMERENGVKQLINQGVKI 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3167194 3170738 - BLOR18194 Blo07g00262 62786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00262 721 Pfam DNA photolyase 8 163 IPR006050 -
Blo07g00262 721 Gene3D - 134 294 - -
Blo07g00262 721 Gene3D HUPs 8 207 IPR014729 -
Blo07g00262 721 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Blo07g00262 721 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Blo07g00262 721 PANTHER CRYPTOCHROME 5 553 IPR002081 -
Blo07g00262 721 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Blo07g00262 721 PRINTS DNA photolyase signature 353 371 IPR002081 -
Blo07g00262 721 PRINTS DNA photolyase signature 392 406 IPR002081 -
Blo07g00262 721 PRINTS DNA photolyase signature 333 349 IPR002081 -
Blo07g00262 721 PANTHER CRYPTOCHROME 2B APOPROTEIN 5 553 - -
Blo07g00262 721 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Blo07g00262 721 Pfam FAD binding domain of DNA photolyase 284 480 IPR005101 -
Blo07g00262 721 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Blo07g00262 721 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00262 K12119 CRY2; cryptochrome 2 - mnt:21404280 938.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00740 Blo-Chr2:24320959 Blo07g00262 Blo-Chr7:3167194 6.78E-109 dispersed
Blo07g00262 Blo-Chr7:3167194 Blo12g00706 Blo-Chr12:25346899 0 dispersed
Blo07g00262 Blo-Chr7:3167194 Blo11g00033 Blo-Chr11:266677 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00262 Blo_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0