Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00331 ATGGAGAGGTCGAGATCCAAGCGGAACTACTACTATGAACACCAGGACTATGATTCCGATACTATTCCAAGAACCAGAGCTAGATACAACAACACTCACTACCCGCCTAGTAATCATCGTCACCGTGGCAATGCTGCGCGACCCTCCAAACCTCCTCAAGACCAATCTCCGGTCCTTACCACCACTTACCGGATACTCTGCCACGACATGAAGATCGGTGGGGTGATTGGTAAGTCTGGAAGCATTATCAAGTCAATTAGGCAACATACTGGCGCCTGGATTAACGTCCACGAACTCGTTCCTGGCGATGACGAGCGAATCATCGAAATTACAGACACTCGACGTCGTGATCCTGATGTTCGACTACCCTCCTCCCCCGCCCAAGAGGCTCTCATTATGATTCATGAGAGGACGCTCGAGAGTGACGTTGGAGCTGGGTTCAGTGGCACTAAGTACGACACTGGTGACGAAGAAGACGAGTATGGCGCAGTTAGAGGTGGTGGCGGAAATCGAGTTGCTACCAGGCTGGTGGTGTCGAGAATGCATGTTGGTTGTTTGTTGGGAAAGGGAGGGAAGATTATCGAACAAATGAGGAATGAAACCAAGACACAAATTAGAGTTCTACCTAGAGATCACAATATTCCTCGTTGCGTTTCAATGTCAGAGGAGATCGTTCAGGTTGTTGGTGATCCAAATGCTGTAAAGAATGCTGTAGCTATAATTGCATCACGCCTACGGGAGAGTCAGCATCGCGACAGGAGTCATTTCCATGGGCGTATACAATCACCTGAACGGTTTTATCCTCCAGAAGATGATTATATTCCACCTGCGACTAATGTATCACGCCGCTCATCCATGGATGGGGCATCAGTCAGGTCACGTTTGTCCACTAACAATAGCAGAGGCAGTAATTACACAGCGCGTTCATTTCCGAGTGACACTGGAGCTTTTCCTATGGTTGATAACATGCAGCCTTTTTACTGTGATGAACTTATGGTGTTTCGAATGCTTTGTCCAACTGACAGAGTTGAAAGTATTGTGGGAGAATCAGATGGATTTATTGAACTTCTGCAAAATGAAGTTGGCGTCGATGTCAAAGTTTCTGACCCTGTAGCTGGTTCGGAAGAACAGATTATTGTCATTTCCTCTGAGGAGGGTCCAGACGATGATCTTTTTCCAGCTCAGGAAGCTTTACTGCACATCCAAACTCGTATAGTTGATATAATTCCAGACAAAGAAAATGTTGTAACTACTAGATTAGTTGTTTCATCCAGTGATATTGGCTGCTTAGAGGGTAGAAGTGGGTCTTTACTTGAGATGAAGAAAATTACTGGAGCAGATATAGAAATACTGCCCAGGGAAGAACTTCCTGCATGTGTTGCCTCAACGGATGAACTTGTGCAGATTATAGGAGAGATTAAAGCTGCTCGAGATGCTCTTGTTGAAGTGACATCGAGATTGCGAAGTTATATATACAGGGAGTTGTTCCAAAGAGATGTAAACCCTTCTCCTTCCTCCGTAGTAGGAAAGGAGACATTATCTCCAAATAGCAATGCCGGAAGTCGTCAAGTTCATAGTGGCAATGATTCTCAGAATGCGCCTAACCTGAATGTGCAACCTTTGCCATCTGCGCAACCAATAAAGGCGATTGGATATTCTGGCAGTGAGCTGACAAAGCAGAACGAGAGTGACCATACCCAAGATGTGCCAAGTAGTTTAAACCGGATCCCTGTACCGCTTGTGACTAGGAGCACAATTGAAGTAGTCATACCTGAACACGCATTTCCAAAGCTTCTAACAAAATCCAGGAGCAAGCTTAGTCAGATTAGTGAGCTGTCAGGGGCAAATGTAAAGCTGATAGAAGATCAACCGGAGATAACCCAAAAGATCATTCAGATATCTGGTGCACCGGAGCAGGTCGAGAGAGCCCAGAGCTTGCTTCAAGGCTTCATTTTGAGCAGTAAGTATGATTACTCTCTCCCATCTCCTTGTTCTTGTGCAGGAGCTAAAATTTTTTGTTTTTGA 2025 45.48 MERSRSKRNYYYEHQDYDSDTIPRTRARYNNTHYPPSNHRHRGNAARPSKPPQDQSPVLTTTYRILCHDMKIGGVIGKSGSIIKSIRQHTGAWINVHELVPGDDERIIEITDTRRRDPDVRLPSSPAQEALIMIHERTLESDVGAGFSGTKYDTGDEEDEYGAVRGGGGNRVATRLVVSRMHVGCLLGKGGKIIEQMRNETKTQIRVLPRDHNIPRCVSMSEEIVQVVGDPNAVKNAVAIIASRLRESQHRDRSHFHGRIQSPERFYPPEDDYIPPATNVSRRSSMDGASVRSRLSTNNSRGSNYTARSFPSDTGAFPMVDNMQPFYCDELMVFRMLCPTDRVESIVGESDGFIELLQNEVGVDVKVSDPVAGSEEQIIVISSEEGPDDDLFPAQEALLHIQTRIVDIIPDKENVVTTRLVVSSSDIGCLEGRSGSLLEMKKITGADIEILPREELPACVASTDELVQIIGEIKAARDALVEVTSRLRSYIYRELFQRDVNPSPSSVVGKETLSPNSNAGSRQVHSGNDSQNAPNLNVQPLPSAQPIKAIGYSGSELTKQNESDHTQDVPSSLNRIPVPLVTRSTIEVVIPEHAFPKLLTKSRSKLSQISELSGANVKLIEDQPEITQKIIQISGAPEQVERAQSLLQGFILSSKYDYSLPSPCSCAGAKIFCF 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4265892 4269183 + BLOR18263 Blo07g00331 62855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00331 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 496 IPR036612 GO:0003723
Blo07g00331 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 328 398 IPR036612 GO:0003723
Blo07g00331 674 MobiDBLite consensus disorder prediction 1 57 - -
Blo07g00331 674 MobiDBLite consensus disorder prediction 24 38 - -
Blo07g00331 674 MobiDBLite consensus disorder prediction 1 23 - -
Blo07g00331 674 Gene3D - 331 491 - -
Blo07g00331 674 ProSiteProfiles Type-1 KH domain profile. 583 647 - -
Blo07g00331 674 SMART kh_6 59 139 IPR004087 GO:0003676
Blo07g00331 674 SMART kh_6 330 403 IPR004087 GO:0003676
Blo07g00331 674 SMART kh_6 170 246 IPR004087 GO:0003676
Blo07g00331 674 SMART kh_6 414 488 IPR004087 GO:0003676
Blo07g00331 674 SMART kh_6 582 652 IPR004087 GO:0003676
Blo07g00331 674 Pfam KH domain 585 648 IPR004088 GO:0003723
Blo07g00331 674 Pfam KH domain 62 111 IPR004088 GO:0003723
Blo07g00331 674 Pfam KH domain 174 242 IPR004088 GO:0003723
Blo07g00331 674 Pfam KH domain 417 482 IPR004088 GO:0003723
Blo07g00331 674 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 561 - -
Blo07g00331 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 50 113 IPR036612 GO:0003723
Blo07g00331 674 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 561 - -
Blo07g00331 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 252 IPR036612 GO:0003723
Blo07g00331 674 ProSiteProfiles Type-1 KH domain profile. 331 398 - -
Blo07g00331 674 MobiDBLite consensus disorder prediction 261 306 - -
Blo07g00331 674 CDD PCBP_like_KH 62 135 - -
Blo07g00331 674 MobiDBLite consensus disorder prediction 278 306 - -
Blo07g00331 674 MobiDBLite consensus disorder prediction 503 540 - -
Blo07g00331 674 ProSiteProfiles Type-1 KH domain profile. 171 241 - -
Blo07g00331 674 Gene3D K Homology domain, type 1 59 141 IPR036612 GO:0003723
Blo07g00331 674 CDD KH-I 585 648 - -
Blo07g00331 674 ProSiteProfiles Type-1 KH domain profile. 60 134 - -
Blo07g00331 674 Gene3D K Homology domain, type 1 581 652 IPR036612 GO:0003723
Blo07g00331 674 CDD PCBP_like_KH 175 242 - -
Blo07g00331 674 Gene3D K Homology domain, type 1 168 250 IPR036612 GO:0003723
Blo07g00331 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 575 653 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00331 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 899.427
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00774 Blo-Chr6:31023825 Blo07g00331 Blo-Chr7:4265892 9.35E-60 dispersed
Blo07g00331 Blo-Chr7:4265892 Blo18g00394 Blo-Chr18:4236000 2.00E-58 dispersed
Blo07g00331 Blo-Chr7:4265892 Blo17g00367 Blo-Chr17:4014655 1.05E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00331 Blo_Chr07 FPKM 0.354586 0.0 0.0 0.0 0.0 0.0 0.0 2.364207 3.817503 3.584871