Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00335 ATGGATCTCGATAGCATTGAGTGCGTGTCGGATGGCCTGGACGAGGATGAGATCCATCAGAACCGCACCCTTCATTCGCATCCTCATCATCATCCCGAGTTTGGGGCTTCGAAACCTCGAAATGGCACTAACAATGGCGCTGTAGCTGTTCCGACTGCGACTGCTCCAGCCACCAGCGTCCATGAGTTGCTCGAATGCCCAGTCTGTACCAATTCTATGTACCCACCAATCCATCAGTGCCATAATGGGCATACCCTGTGTTCGACGTGCAAAACAAGAGTACACAACCGATGCCCCACTTGCCGGCAAGAGCTGGGAGATATAAGGTGCTTGGCACTAGAAAAGGTGGCAGAGTCGCTTGAATTGCCCTGCAAGTACTACTCCTTGGGATGTCCAGAGATCTTCCCCTACTACACCAAACTCAAGCACGAGGCCATGTGCAATTTCCGACCATACAATTGCCCTTATGCTGGATCCGAGTGCTCTATCGTGGGGGATATTCCTTTTCTCGTTGCTCATTTGCGGGATGATCACAAAGTCGATATGCACACCGGCTGCACGTTTAACCATCGATACGTCAAGTCAAATCCCCGAGAAGTCGAGAATGCCACTTGGATGCTCACTGTATTCCATTGTTTTGGGCAGTACTTCTGCCTCCATTTTGAAGCTTTCCAGCTCGGAATGGCGCCTGTTTACATGGCGTTTCTCCGCTTTATGGGTGATGAGAACGAGGCCCGAAGCTACAGCTACAGCCTCGAGGTTGGCGGGTTTGCTCGGAAATTGATATGGGAGGGAAGTCCACGTAGCATTAGGGACAGCCATCGAAAGGTTAGGGATAGCCACGACGGGCTAATAATTCAAAGAAACATGGCGCTATTCTTCTCCGGCGGGGATAGAAAGGAGCTGAAGCTGAGAGTTACAGGGAGGATATGGAAGGAGCAGAACCCAGATGCCGTCGTGTGCATACCAAACCTGTGTAGCTAA 984 51.12 MDLDSIECVSDGLDEDEIHQNRTLHSHPHHHPEFGASKPRNGTNNGAVAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYTKLKHEAMCNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARSYSYSLEVGGFARKLIWEGSPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAVVCIPNLCS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4307006 4308422 + BLOR18267 Blo07g00335 62859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00335 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 118 IPR013083 -
Blo07g00335 327 SUPERFAMILY TRAF domain-like 119 311 - -
Blo07g00335 327 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Blo07g00335 327 CDD RING-HC_SIAHs 64 102 - -
Blo07g00335 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 172 IPR013083 -
Blo07g00335 327 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 307 IPR008974 GO:0005515
Blo07g00335 327 CDD Sina 180 308 - -
Blo07g00335 327 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 319 - -
Blo07g00335 327 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Blo07g00335 327 MobiDBLite consensus disorder prediction 24 46 - -
Blo07g00335 327 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo07g00335 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 319 - -
Blo07g00335 327 SUPERFAMILY RING/U-box 54 106 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g00335 Blo15g00087 CCT
Blo07g00335 Blo15g00087 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00335 Blo-Chr7:4307006 Blo16g00472 Blo-Chr16:18693382 0 dispersed
Blo11g00369 Blo-Chr11:3124587 Blo07g00335 Blo-Chr7:4307006 6.24E-23 transposed
Blo15g00087 Blo-Chr15:726299 Blo07g00335 Blo-Chr7:4307006 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00335 K04506 - csv:101215696 645.966