Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00349 ATGGCGGAAATGGGAGAGACGGAGCAGAAGAATCTAATGAAAGCGCTTGAACAAGGAAGGGATTTCACAAGGCAGCTGCAAGTTCACCTAAAGTTGTCGTCTTCGTCCAAAGAAGTGCGAGAATTTCTGGTTCAGAAGATTCTAGGTTCATACGAGACAGCTCTTTCCCTGCTCAGTTGCAGCACAACAATGGCGGATCACCCACAGTTTCCAAACGTTGGAATTAATATATCAGACTCTCCATCCCCTAATTTCAATGAAAGCCCTAGAAGCGAAGACTCCGACTTTGAGTTCAAGGATCCAAATCACAAAAATGGTTCTACAAAGAGGAGCAGTTTTGAAACATGGAGTAGGAAAGTGAGAGTAAGTCCAGGAATGGGAGTTGAAGGGCCTCCTGATGATGATTTTACATGGAGAAAATATGGACAGAAAGACATTCTGGGTGCAGGTCATCCAAGAAGCTACTACAAATGCTCAAACAGAAAGTTGAGGGGCTGTTTGGCCACAAAGCAAGTTCAACGATCAGACGAAGATCCTAACATCTTCGATATAACTTACCGTGGACCTCACACGTGCAATCAAATCTCCAATTCTCCGAGGCTTCGTTTCTGCTCTCCGCCGGAGAATCAAGATTCTAAGCCCGCCAAAATTCCCTCCTTCAACCAATCGGATCAAAATCAGCTCATGGAATCTCTCAAGATAGCTGCTGATGACACAAACGCGCAGAAATGGTTTACCCCGATTCAGTTCGCTTCTTCTTCAAATGCGATTTCGGAAAATCGCATCGACGCCGAATTCTCCGGGGATTTATCTTTGATGTTTGAGACTTTTCAAGCGTCGCCGGAGAAGAATTCTTTCTCGAGATTTCACGACGAGTCAGAGCTTTCGAAAGTAGTCTCGCCTGCAACTTCATCGAGTGGATCTCGAACAATGGCCGCCACTGAGTCTCGTTTCATGGATCAGAGTAAGTTGGGTCCGAGTTTCAGTTTCGATAACTCCGGTTTCTTCCGCTAA 1014 45.46 MAEMGETEQKNLMKALEQGRDFTRQLQVHLKLSSSSKEVREFLVQKILGSYETALSLLSCSTTMADHPQFPNVGINISDSPSPNFNESPRSEDSDFEFKDPNHKNGSTKRSSFETWSRKVRVSPGMGVEGPPDDDFTWRKYGQKDILGAGHPRSYYKCSNRKLRGCLATKQVQRSDEDPNIFDITYRGPHTCNQISNSPRLRFCSPPENQDSKPAKIPSFNQSDQNQLMESLKIAADDTNAQKWFTPIQFASSSNAISENRIDAEFSGDLSLMFETFQASPEKNSFSRFHDESELSKVVSPATSSSGSRTMAATESRFMDQSKLGPSFSFDNSGFFR 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5536929 5538726 + BLOR18281 Blo07g00349 62873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00349 337 MobiDBLite consensus disorder prediction 90 107 - -
Blo07g00349 337 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo07g00349 337 MobiDBLite consensus disorder prediction 72 89 - -
Blo07g00349 337 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 335 - -
Blo07g00349 337 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 335 IPR044810 GO:0003700
Blo07g00349 337 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo07g00349 337 ProSiteProfiles WRKY domain profile. 133 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo07g00349 337 MobiDBLite consensus disorder prediction 72 112 - -
Blo07g00349 337 Gene3D WRKY domain 125 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo07g00349 337 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00349 - - - qlo:115960625 268.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00178 Blo-Chr4:1480549 Blo07g00349 Blo-Chr7:5536929 1.92E-26 dispersed
Blo07g00349 Blo-Chr7:5536929 Blo12g00229 Blo-Chr12:14800819 5.75E-37 dispersed
Blo07g00349 Blo-Chr7:5536929 Blo02g00331 Blo-Chr2:3370800 4.57E-47 transposed
Blo07g00349 Blo-Chr7:5536929 Blo16g00462 Blo-Chr16:18421175 1.60E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g867 . . Bda05g00111 . Bpe03g00242 . Bma10g01288 . Cmo16g00074 Cmo18g01329 . . . . . . Cpe14g00056 Bhi01g01452 Tan01g0147 . . Hepe07g0088 Mch10g0087 . . . . . . . . . . . . . . . . Blo07g00349 . . . . . . . . . . Cma16g00071 Cma18g01300 Car16g00062 Car18g01216 Cpe09g00042 . . . . . . . . Cla05g00948 Cam05g1039 Cec05g1044 Cco05g1038 Clacu05g1030 Cmu05g0980 Cre05g1059 . Csa03g02198 Chy06g01255 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007354 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12594 PF03106 WRKY 3.40E-25 CL0274 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00349 Blo_Chr07 FPKM 15.219186 15.901587 27.351725 27.355934 5.142669 5.256245 6.03743 30.693037 29.966064 32.894558