Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00360 ATGGGCGGGATACGCCTATCACTGAAAGAAACCCGGAAGGCGGGATACACTGGAAGGGAAGAAACCTTGAAGGCAAAATACTCCGGAAAGGGGATAGAATATGGAGTTGGGGCGAAGGAGGCGTTCATTGACGACCATTTTGAGCTCGCCGTTGAGCTTTATACTCAGGCCATTTCTCTAAACCCCAAAAAGCCTGACCTTTTTATTGATCGTGCTCAGGCCAATATCAAGCTCTCTAATTTCACTGAAGCTGTTTCTGATTCAAACAGGGCAATTGAGTTGGACCCATCCAATCCTAAAGCATACTTGCGCAAAGGTACTGCATGCATCAAACTAGAGGAATATCAGACTGCAAAGGCAGCTTTGCAAACAGGTGCCTCTTTGGCTCCAAAAGATTCAAGATTCACCAGTCTAATAAAAGAATGTGACAAGCTCATTGCCGAGGAAGCTGGTGATCTCTCACAAAAGTTAGTAGAAAAGCCCGATTCAACATCTGTTGAATTGACTAATGAGGTGCAATCACTGAGTGATTTTTCCAATACGGTGACAGCAGGTGTAGCCAAGCCAAGATTTAGGCATGAATTCTATCAGAAACCAGAGGACGTGGTGGTTACTGTATTTGCAAAGGGCGTACCAGCGGACAATGTTACCATTGATTTTGGTGAACAAATTCTAAGTGTCAACATTGAAGTTCCAGGTGAAGATGCATATCAGTTTCAGACTCGGTTATATGGAAAGAGATTTCTGCATTATAATCATTTTGAAGCTTTAAGTGAGAAAGAAGAGAAGTTGGATGGAGATGCTGGATTGAACAAATTTTTCAGAGATATTTTCAAAGATGCGGATGAAGACATGAGAAGAGCCATGTCTAAATCTTTTGTGGAGTCAAATGGCACTGTTCTATCGACAAACTGGAAAGAGGTGGGCTCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGTTCCTGTTCATCTTGAGTTCGTGTCTAAATTGGGAAAAGTTGTGCAAGGAAAAGGGGAAGTGAAGAGTACTCAGTGA 1035 42.8 MGGIRLSLKETRKAGYTGREETLKAKYSGKGIEYGVGAKEAFIDDHFELAVELYTQAISLNPKKPDLFIDRAQANIKLSNFTEAVSDSNRAIELDPSNPKAYLRKGTACIKLEEYQTAKAALQTGASLAPKDSRFTSLIKECDKLIAEEAGDLSQKLVEKPDSTSVELTNEVQSLSDFSNTVTAGVAKPRFRHEFYQKPEDVVVTVFAKGVPADNVTIDFGEQILSVNIEVPGEDAYQFQTRLYGKRFLHYNHFEALSEKEEKLDGDAGLNKFFRDIFKDADEDMRRAMSKSFVESNGTVLSTNWKEVGSKKVEGSPPEVPVHLEFVSKLGKVVQGKGEVKSTQ 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5802866 5808740 - BLOR18292 Blo07g00360 62884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00360 344 SUPERFAMILY HSP20-like chaperones 188 245 IPR008978 -
Blo07g00360 344 Pfam CS domain 192 234 IPR007052 -
Blo07g00360 344 Pfam Tetratricopeptide repeat 100 132 IPR019734 GO:0005515
Blo07g00360 344 Pfam Tetratricopeptide repeat 70 98 IPR019734 GO:0005515
Blo07g00360 344 SMART tpr_5 65 98 IPR019734 GO:0005515
Blo07g00360 344 SMART tpr_5 31 64 IPR019734 GO:0005515
Blo07g00360 344 SMART tpr_5 99 132 IPR019734 GO:0005515
Blo07g00360 344 PANTHER PROTEIN SGT1 HOMOLOG 36 247 IPR044563 GO:0051087
Blo07g00360 344 PANTHER PHOSPHATASE-RELATED 258 319 - -
Blo07g00360 344 CDD p23_CS_SGT1_like 194 246 - -
Blo07g00360 344 PANTHER PHOSPHATASE-RELATED 36 247 - -
Blo07g00360 344 PANTHER PROTEIN SGT1 HOMOLOG 258 319 IPR044563 GO:0051087
Blo07g00360 344 Gene3D - 189 255 IPR008978 -
Blo07g00360 344 ProSiteProfiles SGS domain profile. 236 328 IPR007699 -
Blo07g00360 344 Gene3D Tetratricopeptide repeat domain 9 161 IPR011990 GO:0005515
Blo07g00360 344 ProSiteProfiles TPR repeat profile. 65 98 IPR019734 GO:0005515
Blo07g00360 344 Pfam SGS domain 259 319 IPR007699 -
Blo07g00360 344 SUPERFAMILY TPR-like 38 142 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00360 K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1 - sly:101258625 352.443
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00360 Blo09g00053 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00360 Blo-Chr7:5802866 Blo15g00595 Blo-Chr15:13586194 8.28E-12 dispersed
Blo01g00117 Blo-Chr1:1613684 Blo07g00360 Blo-Chr7:5802866 2.20E-13 transposed
Blo04g01357 Blo-Chr4:31167648 Blo07g00360 Blo-Chr7:5802866 2.52E-09 transposed
Blo11g00639 Blo-Chr11:6626217 Blo07g00360 Blo-Chr7:5802866 7.54E-07 transposed
Blo11g01015 Blo-Chr11:26321286 Blo07g00360 Blo-Chr7:5802866 2.14E-09 transposed
Blo16g00352 Blo-Chr16:10319300 Blo07g00360 Blo-Chr7:5802866 1.25E-08 transposed
Blo07g00360 Blo-Chr7:5802866 Blo09g00053 Blo-Chr9:876775 1.31E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00360 Blo_Chr07 FPKM 10.153513 12.774826 7.067452 6.859059 10.785147 14.241822 10.269056 2.803057 3.699399 3.351209