Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00372 ATGGGCACTTTTCGGATTTTAGCTAGTCAGTCTCAGAAAAGTTCAATTTTCTGGAGTTTCGACGGTTGGATCGGCATGCAATTTTGGCAGCGGGTTCATGACTTCTTGGGCATCAATCTGAACGGTGGAGATCTATTTTTGAGCTCTAAGACACTGGTGGTGGAATTGCAACTTAAGGATGAAAAAGCTAAGCAAAAAGCTCTGAAGGCAGTATCTGGTGTATCAGGGATCGAATCGATGGAAATAGAACCGAAAGGCAAGAAACTGACAGTAGTCGGAGACGTTGATCCTGTGTGTGTTGTGCAGAAATTAAGGAAGCGTTGTCGCACGACCATAAATTCACTGGGGCCGGCGAAAGAAGAGAAGAAGCAAGAACCAGACAAGACAGATCCAGTGGGTGAGCCTGTGCTGGCTTATACAGCTTATTGTCCATTGCATGTGCAGAGGAATATCCCAGTGGTTGTGTTATTTATTGAAAATCTACTCAAACTTTCATACACTGGAAGGGAAGTATGGGCTACATTTCCTAGGCAGGAAGAGGCCATTAAGTTTGTTGCTCAGCAACATACACATGTCCATATTTTTAGTTATCAGAATCATTATAATGGACAAAGGAGATTCCTTGTTGCAGCATGTGAGGAGTTTTGGCGAAGATACAAAAGTATGGATTCCCAATTCCGCCATCATTATGAAGTGATTCAAGAGATGAACATAGGTTTGCCATGTCACCTTTACTTTGATCTGGAACACTGTAAGAGAGTCAATACAACCGCATTTAAGGACAATTCTCATGCAGGCGCATTTGTTTTAGAGATATGCTCACAGATACGTGGTTCAAAGGAGGGTGGAAGATTTCATGGCCTATTTGTTAAAAGAGATGCAAGTTCTATTGAATCATCAAGCCAACTCTTTAGGGAGAAAGACATGTTTATGGCATCCTTGATCTGCAATATTGACGTTGATTGTGAGAAGCTTCTTGTCTGCAAGTTGGAGTTAGAATGTGCTAAGACCCTGAACTTTGAAACAGAGGTAAATCAGAACTTTAAACGACATTGCGGCGCTGCTAAGGAATCATTAAATCATTGCTTAACTAATGTTTCAGCATCATGTTTTGTGGGAAAGTCGCCAATCCCAGCCATCAACAACTTCGTGGAGTTTGTTGCATCCATAGGAAATGTACCAGGAAAAATAGAATCTTGGTATTGGTTCTCAGAGTATGGACTAATGGCCTATAGCATGTCAAGAAATAGGTACTGTGAACGAATTGGTCGAGAGCACAAAAGCAACCATGTGATTTATGTTGTTGACCTGAGAAGAGAGGTTTATTATCAGAAATGTCATGATCCAGACTGTAAAGGCTATCGATCACCCTTGCGGCCTGTCCCACATGGCATTATCTCAGTTCCTTGGGGTTTGGATGATTCAGTAGAGGTTGTTAAAGATCAAGAATTGACACAGAACGACATCAGTTCTCTTTCACTTGATGATGAACATATGTATCTTCAGCTTTGCAATGAGGAAAGCATTTCAGAGGGCAGAGGAGAAGATTCATGGTGGCTTGATGCTAAACTGGTGGTGGAATTGCAACTTCAGGATGAAAAAGCTAAGCAGAAAGCTCTGAAGGCAGTATCTGGTCTATTAGGGATCGAATCGATGCAAATAGAACCGAAAGGCAAGAAACTGACAGTAATCGGAGACATTGATCCTGTCTGCGTTGTGAAGAAATTAAGGAAGCGTTGTTGCACGACCATAGTTTCAGCGGGGCCAGCCAAAGAAGAGAAGAAGCAAGAACCAAAACAAGAAGATCCAGCGGCTGAGCTTGGGAAGGCTTATCAAGCTTATTATCCATATATGCCCCCTTATTATTATGTTACAAGTGCAGAGGAAAATCCCAATGCTTGTGTTATTTGTTGA 1914 41.9 MGTFRILASQSQKSSIFWSFDGWIGMQFWQRVHDFLGINLNGGDLFLSSKTLVVELQLKDEKAKQKALKAVSGVSGIESMEIEPKGKKLTVVGDVDPVCVVQKLRKRCRTTINSLGPAKEEKKQEPDKTDPVGEPVLAYTAYCPLHVQRNIPVVVLFIENLLKLSYTGREVWATFPRQEEAIKFVAQQHTHVHIFSYQNHYNGQRRFLVAACEEFWRRYKSMDSQFRHHYEVIQEMNIGLPCHLYFDLEHCKRVNTTAFKDNSHAGAFVLEICSQIRGSKEGGRFHGLFVKRDASSIESSSQLFREKDMFMASLICNIDVDCEKLLVCKLELECAKTLNFETEVNQNFKRHCGAAKESLNHCLTNVSASCFVGKSPIPAINNFVEFVASIGNVPGKIESWYWFSEYGLMAYSMSRNRYCERIGREHKSNHVIYVVDLRREVYYQKCHDPDCKGYRSPLRPVPHGIISVPWGLDDSVEVVKDQELTQNDISSLSLDDEHMYLQLCNEESISEGRGEDSWWLDAKLVVELQLQDEKAKQKALKAVSGLLGIESMQIEPKGKKLTVIGDIDPVCVVKKLRKRCCTTIVSAGPAKEEKKQEPKQEDPAAELGKAYQAYYPYMPPYYYVTSAEENPNACVIC 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6054325 6068843 - BLOR18304 Blo07g00372 62896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00372 637 Gene3D - 47 121 - -
Blo07g00372 637 Gene3D - 521 593 - -
Blo07g00372 637 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 254 303 IPR044917 GO:0003887|GO:0003896|GO:0042276
Blo07g00372 637 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 296 525 IPR044917 GO:0003887|GO:0003896|GO:0042276
Blo07g00372 637 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 142 256 IPR044917 GO:0003887|GO:0003896|GO:0042276
Blo07g00372 637 Pfam Herpesviridae UL52/UL70 DNA primase 402 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00372 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7] - qsu:111994508 405.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00372 Blo-Chr7:6054325 Blo09g00062 Blo-Chr9:1085705 2.78E-16 dispersed
Blo07g00371 Blo-Chr7:6023821 Blo07g00372 Blo-Chr7:6054325 0 tandem
Blo07g00372 Blo-Chr7:6054325 Blo07g00373 Blo-Chr7:6106251 3.38E-30 tandem
Blo10g00882 Blo-Chr10:27796478 Blo07g00372 Blo-Chr7:6054325 4.36E-06 transposed
Blo07g00372 Blo-Chr7:6054325 Blo09g00061 Blo-Chr9:1069830 4.03E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g771 . . . . Bpe03g00262 . Bma10g01255 . . . . Cma15g01070 . . . . . . . . . . . . Cla01g00091 Cam01g0092 Cec01g0092 Cco01g0093 Clacu01g0090 Cmu01g0092 Cre09g2415 . . . . . Csa05g00103 . . Blo07g00372 . . . . . . . . . Cmo15g01127 . . . . . Cpe13g00274 . . . . . . . . . . . . . . . . . Cme09g01936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009435 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00372 Blo_Chr07 FPKM 20.426504 22.407587 5.118484 5.648716 10.509827 12.703297 14.11353 4.633997 4.470211 4.637268