Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00389 ATGGCTACCGCTCAAGTTGTGGAGGCTGATCTGGATGAATTTTTTGAAAAATACAAAAACAAAGGAAAGAAAGAGCATCAAGCTGGTGGCAAAATGTCTAGGAAGGACAAGAGAAAGGTTCCTAACCATGGAGGTCATTCTCAGGGTGGTTCCAGTGGACATTCTGGTGGAACTCCATATGCTACAGGGCAACTGGCTCCTATGTTTGCCATACTTGCGAGGCAACCTAAACATCTGTGGAGAAATTGTCCAGAAAATCAGAGGCCTTCTCAAGGTGGCTTTGCACTTACTCAGTCGGCCCCACCTAGGCCTAATTTTGGAGTTGGTCGAGGATTTCCCAATCAGGTTGGTACAGACTTTCAAAGACTTGCTGGGTACAAGCAGATTTATGCTTCTAACCCCACTCCTGTAAGGTATTCTAGCCAGTTTATGGGACCCACTTCTATCCAATCTGGAGCTGGTTACGGAGGTGGCAGGAAAGGAAAGGAAAGGAAAAAGTGTTTGTTTTTACCATATTCATTTATTGAGAAAGAAGCTAGTCACGTTGAAGGTTTCAGTCCAGAATTAGCACTTGTTACAGTTGGAGGAGGAAAGGAACTTGAAGAAAAACTTGTGGCTCTTCAGATGATTGATGTCTATACCAAATTTGCCTATGAGCAAGCAGCAATACCTGTTGTTGCAGGGCAAAAATCAAAGGTGGAGACATTTGCTGGTGCAGATAGGACATATACAATAGAGGCCATGATGGGTGACAGAAAGGCATTACAGGCGGGAACCAGCCATAATCTCGGACAGGATTTTTCTAGTGCCTTTGGAACATAG 822 44.28 MATAQVVEADLDEFFEKYKNKGKKEHQAGGKMSRKDKRKVPNHGGHSQGGSSGHSGGTPYATGQLAPMFAILARQPKHLWRNCPENQRPSQGGFALTQSAPPRPNFGVGRGFPNQVGTDFQRLAGYKQIYASNPTPVRYSSQFMGPTSIQSGAGYGGGRKGKERKKCLFLPYSFIEKEASHVEGFSPELALVTVGGGKELEEKLVALQMIDVYTKFAYEQAAIPVVAGQKSKVETFAGADRTYTIEAMMGDRKALQAGTSHNLGQDFSSAFGT 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6682479 6695886 - BLOR18321 Blo07g00389 62913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00389 273 MobiDBLite consensus disorder prediction 82 103 - -
Blo07g00389 273 MobiDBLite consensus disorder prediction 18 61 - -
Blo07g00389 273 PANTHER PROLYL-TRNA SYNTHETASE 168 205 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Blo07g00389 273 PANTHER PROLYL-TRNA SYNTHETASE 206 273 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Blo07g00389 273 MobiDBLite consensus disorder prediction 18 35 - -
Blo07g00389 273 MobiDBLite consensus disorder prediction 45 59 - -
Blo07g00389 273 SUPERFAMILY Class II aaRS and biotin synthetases 169 272 IPR045864 -
Blo07g00389 273 Gene3D Bira Bifunctional Protein; Domain 2 205 273 IPR045864 -
Blo07g00389 273 MobiDBLite consensus disorder prediction 84 98 - -
Blo07g00389 273 PANTHER BNAC09G28510D PROTEIN 168 205 - -
Blo07g00389 273 PANTHER BNAC09G28510D PROTEIN 206 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00389 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - sspl:121802017 128.642
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00389 Blo-Chr7:6682479 Blo17g00584 Blo-Chr17:11148087 1.84E-08 dispersed
Blo07g00389 Blo-Chr7:6682479 Blo07g00393 Blo-Chr7:6759071 1.61E-16 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033569 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00389 Blo_Chr07 FPKM 69.551094 77.688126 41.98782 42.039368 27.240187 25.425081 26.115677 46.786934 47.218456 47.874657