Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00410 ATGGTGAGCCAGAGGCAGAGGCTAGCCCGGAAATCGTACAGAGAAGCTCATCCGGATCTCTTTCCTAAACCAGAAGCAACGAACCCGAAAGACCCGTACAAAACCATGAAGAAGAAGAACAAGTTCAAGCGTAAAACGACGGAGAAGGGAGGCTCTAAACCCTGTAGGAAAGGATTTAAAAAACACCCTCTTAGAGTTCCAGGAATGAAGCCTGGTGAAAGCTGTTTCATCTGCAGAGCTAAAGACCATGTTGCTAAGCTTTGTCCTCAGAAAGCCGAGTGGGAAAAGCATAAGATATGCTTGCTTTGTAGACGTCGTGGGCATAGTCTGAAGAATTGCCCCGACAAAATTGGGGAGATTAAGGATAAAAAGATATGCTATAACTGTGGAGAAACAGGACATTCACTTGATAAATGCAGTCTGCCCCTTCAAGATGGTGGAAGTAAGTATGCGAGCTGCTTTATTTGTAATGAGCAAGGGCACTTAAGCAAAGACTGCCCTCAAAATACTCGTGGAATCTACCCGAAGGGGGGTTGCTGTAAAATTTGTGGTGGTGTGACACATTTGGCTAAAGATTGTCCTAACAAAGGCACCAAATTTTCTGCTAATATAATCAGTAAGATTGCAAGTGAAAGTGAAGAAACACCGAGAGCGCGAGTGACGAAATTTGCGAGTGGGGATGATCTTGAAGATGATTTCATGCCAGGTATTGGTGAAGACATGATCACCATTGAAATTAGCAGGTTTAAACCGCTCTCATCCCCTGTTTTCTTCCTCAATTTTCTCCCTCCCCCCTCCACTTTTTTCTCACCTCCCATTTGCCTGATTCTTTTGCCACCAAAAAATAAGGATCTCTTTCTCTCTCTACCTCTCTATCTCTCTTCCTCTGCCAGTTCTCTCTTTCTCTCTTCTCCGCCATTTCTCCCTGAGGACTCCCTTTCATTCTCTTCTTGGAGAGACAAGATGAATTATAACGTGTTATGTTTTTTGGTGCAGGCAAATGCGGCATCAGGAATGGCAGTGAGCGACGAGTGCAAGCTCAAGTTTTCGGAGCTGAAAACAAAGAGAAATTACAGATTCATCATCTTCATGATTGAAAACCAAGAAGTTGTGGTGGAGAAAGTGGGAAGCCCTGAAGAGAGCTATGAGGATTTCTCATCGTCTCTGCCTCCCGACCAATGTCGTTATGCCGTCTTCGATTTTGATTTCATCACGGACGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCTTGGTCGCCGGATAAATCGAAAGTGAGAAGCAAGATGGTGTATGCAAGCTCAAAGGATAGATTTAAGAGGGAATTGGATGGAATTCAAGTTGAATTACAAGCAACTGATCCAAGTGAAATGAGTTTTGACATCATCAAATCAAGAGCTTTTTAA 1407 43.5 MVSQRQRLARKSYREAHPDLFPKPEATNPKDPYKTMKKKNKFKRKTTEKGGSKPCRKGFKKHPLRVPGMKPGESCFICRAKDHVAKLCPQKAEWEKHKICLLCRRRGHSLKNCPDKIGEIKDKKICYNCGETGHSLDKCSLPLQDGGSKYASCFICNEQGHLSKDCPQNTRGIYPKGGCCKICGGVTHLAKDCPNKGTKFSANIISKIASESEETPRARVTKFASGDDLEDDFMPGIGEDMITIEISRFKPLSSPVFFLNFLPPPSTFFSPPICLILLPPKNKDLFLSLPLYLSSSASSLFLSSPPFLPEDSLSFSSWRDKMNYNVLCFLVQANAASGMAVSDECKLKFSELKTKRNYRFIIFMIENQEVVVEKVGSPEESYEDFSSSLPPDQCRYAVFDFDFITDENCQKSKIFFIAWSPDKSKVRSKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRAF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7637735 7641286 + BLOR18342 Blo07g00410 62934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00410 468 SUPERFAMILY Actin depolymerizing proteins 334 466 - -
Blo07g00410 468 SUPERFAMILY Retrovirus zinc finger-like domains 68 116 IPR036875 GO:0003676|GO:0008270
Blo07g00410 468 Gene3D - 121 172 - -
Blo07g00410 468 Gene3D - 69 120 - -
Blo07g00410 468 SUPERFAMILY Retrovirus zinc finger-like domains 121 169 IPR036875 GO:0003676|GO:0008270
Blo07g00410 468 SMART adf_2 343 468 IPR002108 GO:0003779
Blo07g00410 468 CDD ADF_cofilin_like 337 467 IPR017904 GO:0015629|GO:0030042
Blo07g00410 468 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 121 170 - -
Blo07g00410 468 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 325 468 - -
Blo07g00410 468 PANTHER COFILIN-RELATED 121 170 IPR017904 GO:0015629|GO:0030042
Blo07g00410 468 PANTHER COFILIN-RELATED 325 468 IPR017904 GO:0015629|GO:0030042
Blo07g00410 468 ProSiteProfiles Zinc finger CCHC-type profile. 126 139 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 SMART c2hcfinal6 74 90 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 Pfam Cofilin/tropomyosin-type actin-binding protein 345 465 IPR002108 GO:0003779
Blo07g00410 468 MobiDBLite consensus disorder prediction 1 63 - -
Blo07g00410 468 Pfam Zinc knuckle 153 168 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 Pfam Zinc knuckle 125 139 IPR001878 GO:0003676|GO:0008270
Blo07g00410 468 Gene3D Severin 332 468 IPR029006 -
Blo07g00410 468 ProSiteProfiles ADF-H domain profile. 338 468 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00410 - - - cpep:111810346 565.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01106 Blo-Chr2:42052326 Blo07g00410 Blo-Chr7:7637735 3.57E-69 dispersed
Blo04g00284 Blo-Chr4:2170502 Blo07g00410 Blo-Chr7:7637735 9.72E-61 dispersed
Blo04g00539 Blo-Chr4:4639718 Blo07g00410 Blo-Chr7:7637735 3.71E-06 dispersed
Blo07g00410 Blo-Chr7:7637735 Blo09g00112 Blo-Chr9:2265789 1.80E-82 dispersed
Blo13g00534 Blo-Chr13:27120045 Blo07g00410 Blo-Chr7:7637735 3.09E-07 dispersed
Blo07g00410 Blo-Chr7:7637735 Blo03g00209 Blo-Chr3:4857434 3.50E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00410 Blo_Chr07 FPKM 11.741002 14.068264 12.943122 14.493698 10.101051 9.986471 10.032083 13.595819 13.727206 15.198006