Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00412 ATGGTTTCTCGAAAATTATGCTACATACGCATTGACAGTGATAAAGGAGACGATGATGTTGGGAGTTTTGAGGAATCAGTAAAAAGAATGTGGAAAAGTTATGTTTTTGATTCTGGTGTTATTGACACGCCCAATGAGGACGAATATGAGAGTCGTGAAGATGAAAATTGGTCAACCGGAAAGGGCATTTTTCAGGATGTGGGAGTTCATGCCAGAAGGGTTCTTGAAATTCTAAGACAAGATGGTCCTGGTTTTGACACGAAATCAGCTTTATCTGAGCTGCATATAAGGGTCTCGGGGGTTCTTGTTAGGGAAGTTCTTTTGGGGATCTTGCGAAGCATAAATTATGTGGATAAAACCCGATGTGCACAATTGGCCTGCAAGTTTTTCATATGGTCGGGTGAGCAAAACAGTTATAGGCACACAGTTAGTTCATATCATCTAATTATGAAGATATTTGCTCAATGTGAAGAATTTAAAGCAATGTGGAGGCTAGTGGATGAGATGGCTGAGAATGGGTACCCTATGACGGCACGTACATTTAACATTTTAATATGTACTTGCGGAGAAGCAGGTCTAGCTAGAAAAGTTGTGGAGAGGTTTATAAAATCCAAAGCATTCAGTTATAGACCATTTAAACACTGTTACAATGCTATTTTGCATTCACTTATTGGTATAAACCAGCACAAGTTGATTGAATGGGTCTACCAGCAGATGTTGGTCGAGGGTTATTATCCCGACATTCTGACTTATAATATAGTGATGTGTGCAAAGTTTAAGTTGGGAAAGTTAAGCGAATTTTACTCACTGTTAGATGAAATGGGTCAGAGTGGATTTTCTCCAGATCACCATACATATAACATTCTCCTTCATGTTCTTGGGAGAGGGGACAAGCCACTTGCAGCTCTTAATCTTTTGAATCACATGAAGGAATCGGGATTTGATCCTAGTGTTCTTCACTTCACGACATTGATCGATGGACTTAGTCGGGCTGGAAATTTGGAAGCATGCAAATACTTTTTTGATGAAATGAGAAAAAATAGTTGCAGTCCAGACGTTGTTAGCTACACTGTAATGATAACGGGGCATGTCGCTGCTGCGGAGCTTGAGAAGGCTCAGGAATATTTTGATGAAATGATCATGCAAGGACAGCTACCGAACGTATTTACTTACAACTCGATGATTCGTGGGTTTTGCATGGCGGGTAAGTTCAAGGAGGCATTATCTATGCTCAAGGAAATGGAATCCAGAGGGTGTAGTCCGAATTTTGTAGTTTACAGTACTCTTGTGAGTAATTTACGAAATGCAGGGAAGCTGTCTGAGGCACATGATGTGATCCGGCATATGATGGGGAAAGGGCAGTATGTTCATTTAGCCCCGAAGCTAAAGAGATACAGGCGATGCTAA 1407 40.72 MVSRKLCYIRIDSDKGDDDVGSFEESVKRMWKSYVFDSGVIDTPNEDEYESREDENWSTGKGIFQDVGVHARRVLEILRQDGPGFDTKSALSELHIRVSGVLVREVLLGILRSINYVDKTRCAQLACKFFIWSGEQNSYRHTVSSYHLIMKIFAQCEEFKAMWRLVDEMAENGYPMTARTFNILICTCGEAGLARKVVERFIKSKAFSYRPFKHCYNAILHSLIGINQHKLIEWVYQQMLVEGYYPDILTYNIVMCAKFKLGKLSEFYSLLDEMGQSGFSPDHHTYNILLHVLGRGDKPLAALNLLNHMKESGFDPSVLHFTTLIDGLSRAGNLEACKYFFDEMRKNSCSPDVVSYTVMITGHVAAAELEKAQEYFDEMIMQGQLPNVFTYNSMIRGFCMAGKFKEALSMLKEMESRGCSPNFVVYSTLVSNLRNAGKLSEAHDVIRHMMGKGQYVHLAPKLKRYRRC 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7645168 7646574 - BLOR18344 Blo07g00412 62936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00412 468 Pfam PPR repeat family 316 363 IPR002885 -
Blo07g00412 468 Pfam PPR repeat family 246 293 IPR002885 -
Blo07g00412 468 Pfam PPR repeat family 386 433 IPR002885 -
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Blo07g00412 468 PANTHER OS10G0506000 PROTEIN 2 468 - -
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Blo07g00412 468 Gene3D Tetratricopeptide repeat domain 333 463 IPR011990 GO:0005515
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Blo07g00412 468 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 2 468 - -
Blo07g00412 468 Gene3D Tetratricopeptide repeat domain 185 328 IPR011990 GO:0005515
Blo07g00412 468 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Blo07g00412 468 TIGRFAM PPR: pentatricopeptide repeat domain 250 282 IPR002885 -
Blo07g00412 468 TIGRFAM PPR: pentatricopeptide repeat domain 424 453 IPR002885 -
Blo07g00412 468 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Blo07g00412 468 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Blo07g00412 468 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Blo07g00412 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00412 - - - qsu:112001594 720.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00412 Blo-Chr7:7645168 Blo01g00039 Blo-Chr1:539773 6.45E-18 dispersed
Blo07g00412 Blo-Chr7:7645168 Blo01g01128 Blo-Chr1:40657966 1.55E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00412 Blo_Chr07 FPKM 0.0 0.0 0.257837 0.0 0.0 0.0 0.0 6.10659 5.886763 5.521272