Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00444 ATGGTGAGAGGTAAAATCCAGATGAAGAGAATCGAAGATGCGACGAGTCGGCAAGTGACTTTCAGTAAGCGACGAAACGGGCTGTTGAAGAAGGCCTATGAACTCTCTGTTCTCTGTGATGCTGAGGTTGCTCTAATCATTTTCTCTCAGAAAGGACGGATTTTTGAGTTTTCAAACTCTGACATGCAAAAAACTGTCGAACGATACCGAAAATATCACCAGAATGGACCAGGTCTGAAGATTGACATGGAAGAACGCATGCAGCAACTGAAACTCGAAACCGCAATCATGGCAAAGAAGATTGAGCTTCTTGAAGCTTCTCAAAGGAAGCTTTTGGGAACAGGTTTAGGTTCATCTTCCTTCGAGGAACTCGGAGAGATTGGCAGCCAACTCGATCAGAGTTTACACCGAATAAGGGCTCGAAAGGATCAGTTATATGAAGAGAAGTTAGAACAGTTTCAAGCAAAGGAGGTACTTCTTTTAGAAGAGAATTCAAAGCTAGCTACAGAGTGTGGTGCCAACTCGTGGAACAACAGCAAACGTAAGCAGAGCTTAGATGTGGAGACTCAATTGTTCATTGGATTGAGAAGCTAA 594 43.27 MVRGKIQMKRIEDATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRIFEFSNSDMQKTVERYRKYHQNGPGLKIDMEERMQQLKLETAIMAKKIELLEASQRKLLGTGLGSSSFEELGEIGSQLDQSLHRIRARKDQLYEEKLEQFQAKEVLLLEENSKLATECGANSWNNSKRKQSLDVETQLFIGLRS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8918142 8924278 + BLOR18376 Blo07g00444 62968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00444 197 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Blo07g00444 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo07g00444 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo07g00444 197 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Blo07g00444 197 PANTHER MADS-BOX PROTEIN SOC1 1 195 - -
Blo07g00444 197 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo07g00444 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo07g00444 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo07g00444 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo07g00444 197 PANTHER MADS BOX PROTEIN 1 195 - -
Blo07g00444 197 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Blo07g00444 197 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo07g00444 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo07g00444 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g00444 Blo15g00152 CCT
Blo07g00444 Blo15g00152 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00444 Blo-Chr7:8918142 Blo07g00016 Blo-Chr7:341868 1.08E-43 dispersed
Blo14g00840 Blo-Chr14:30656710 Blo07g00444 Blo-Chr7:8918142 9.21E-21 dispersed
Blo15g00152 Blo-Chr15:1517856 Blo07g00444 Blo-Chr7:8918142 1.07E-64 wgd
Blo06g01107 Blo-Chr6:34467292 Blo07g00444 Blo-Chr7:8918142 2.30E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12605 PF01486 K-box 1.40E-20 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00444 - - sind:105179249 231.491