Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00484 ATGAGAGATTTTAGGGAATTTTCTGCGCCATCTTCTCGTTGCGGAGCAGGAATCATAAAAAGTATCCGTTTGGAGAACTTCATGTGCCATAGTAATTTGGAAATCCAGCTTGGCGAGTGGGTGAACTTTATCACTGGTCAAAATGGAAGTGGAAAGAGCGCAGTATTAACTGCTTTATGCGTTGCATTTGGGTGTCGAGCTAAAGGGACCCAAAGGGCATCTACTTTGAAGGATTTCATAAAAACTGGTTGCAGCTATGCTGTAGTTCACGTTCAATTAAGAAACCAAGGTGAAGAAGCTTTTAAGTCCGAAATATATGGTGATGTCATTATTATTGAACGCAGAATTTCTGAGGCTAGTAATTCCACTAATTTAAAGGATTGCCAAGGAAAAAGGGTTTCCAGTCGGAAAGATGATCTTCGTGAGATAGTTGAACATTTTAATATTGATGTTGAGAATCCTTGTGTGATAATGAGTCAGGACAAAAGTAGAGAGTTTCTGCATTCTGGAAATGACAAAGATAAATTTAAGTTCTTTTTCAAGGCTACACTTCTTCACCAAGTTAACGATCTCTTGAAGAATATTTTTGAACAACTGAGATCTGCAAATGCTCTAGTTGATGATTTGGAAACCTCAATAAGACCTGTTGAGAACGAACTTAGTGAGCTGCAAGGAAAGATAAAGAACATGGAGCATGTAGAAGAAATATCTCAGCAGATTGAGCAAGTAAGTAAGAAGCTGGCATGGTCATGGGTATATGATGTTGACAGACAACTTCAGCAGCAAAGCACAAAGATTGAAAAGCTAAAAGACCGCATTCCTAAGTGCCAGGCAAAAATTGACCGTCAATTGGATCTGGTGGAAAAATTGAGAAAAAGCTTTGCTGAGAAAAAAGATCAGATCGCACACATGGTGGACAAAACTTCAGAAGTGAGAAGTATGAAGGATGAACTGCAAGAAACTCTTACTCAGATGGCGATACTGCCTCGTCTTGTAGCAATGTTACCGAAGGTGGAGGAGATTTTTCGTTTACTTTCGGAGTTAAGGGCTGACCTTGCTCAGTTGCGAGCAGAGTTCCGACGAGGTCCAGAACTTCCACCGAATGTTTGTTCGAGGGTCGACAAAGGAAAAGAGGTGATGGGTATTGACGATTCTGACTCCCGTAATCTGAACTGGTCAACAGACGGCAAAGATCAAGAGTGTTCGCTGGTGGTGGGTCGACGCGAGGAGCGACGATACCGCGATCTAGGGTGTCCGCCGATTGTGGGTAGATGTGAGGAGCAAAGGTACCGTGGTTTACCACGATTTGATTTTTACCGAAACGAGGAGCCTTGA 1335 42.1 MRDFREFSAPSSRCGAGIIKSIRLENFMCHSNLEIQLGEWVNFITGQNGSGKSAVLTALCVAFGCRAKGTQRASTLKDFIKTGCSYAVVHVQLRNQGEEAFKSEIYGDVIIIERRISEASNSTNLKDCQGKRVSSRKDDLREIVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLHQVNDLLKNIFEQLRSANALVDDLETSIRPVENELSELQGKIKNMEHVEEISQQIEQVSKKLAWSWVYDVDRQLQQQSTKIEKLKDRIPKCQAKIDRQLDLVEKLRKSFAEKKDQIAHMVDKTSEVRSMKDELQETLTQMAILPRLVAMLPKVEEIFRLLSELRADLAQLRAEFRRGPELPPNVCSRVDKGKEVMGIDDSDSRNLNWSTDGKDQECSLVVGRREERRYRDLGCPPIVGRCEEQRYRGLPRFDFYRNEEP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10999988 11022452 + BLOR18416 Blo07g00484 63008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00484 444 Pfam AAA domain 21 247 IPR038729 GO:0140664
Blo07g00484 444 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 324 - -
Blo07g00484 444 Coils Coil 192 226 - -
Blo07g00484 444 CDD ABC_SMC6_euk 19 171 - -
Blo07g00484 444 Gene3D - 18 250 IPR027417 -
Blo07g00484 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 296 IPR027417 -
Blo07g00484 444 Coils Coil 259 279 - -
Blo07g00484 444 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 324 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Blo07g00484 444 Coils Coil 338 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00484 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 503.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00484 Blo-Chr7:10999988 Blo04g01244 Blo-Chr4:24476376 1.42E-41 dispersed
Blo02g00439 Blo-Chr2:5865001 Blo07g00484 Blo-Chr7:10999988 7.96E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00023 . 35 1097 Structural Maintenance of Chromosomes family AT5G15920 57.7 0.0e+00 1127.9
Blo07g00484 . 16 319 Structural Maintenance of Chromosomes family AT5G07660 70.1 3.7e-121 433.3
Blo07g00484 . 13 312 Structural Maintenance of Chromosomes family AT5G61460 71.0 3.9e-123 439.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00484 Blo_Chr07 FPKM 0.0 1.516703 3.760183 4.925398 16.024626 15.139008 15.521629 0.0 0.464759 0.570298