Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00557 ATGTCAAATATTACAGGTGAAGAAGGAAGTTTCTCTTCCGGGAATAGTGGAGAAGAAGTAGTTGATCTACAAGAAAAGAAGAATAAGACGGCTCAAAACAATCCCCATGGAACAAGCTCTGGACCTTCTTCTGATCAGCAAAATCAGCAAGCTGTCAAGAAGAAAAGAAGTCTTCCAGGAACTCCAGGCAAATTCAACTATCCACCCACCATTAATAAACTTTGGGCGCTCATAAACCCAAATGCTGAGGTTATAGCACTTTCACCAACAACCCTCATGGCGACAAACAGATTTGTGTGTGAAATCTGTAACAAAGGGTTTCAGAGGGATCAAAATCTTCAACTTCACAGACGAGGGCATAATCTACCATGGAAACTTCGGCAGAGAACGACAGCCGAAGTTAAGAAACGAGTCTACATTTGCCCCGAGCCGTCGTGCGTTCATCACAACCCAGCTCGAGCTCTCGGAGATCTGACTGGAATCAAAAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCAGACTGGAAGGCTCATCAAAAAACATGTGGAACAAGAGAATACAAATGTGACTGCGGAACAATCTTTTCCAGGAGAGATAGCTTTATTACACACAGGGCATTTTGCGATGCATTAGCAGAAGAAAACAACAAAGTAAACCAAGAAATGATGAACAACAACAGCAACATGTTACCCTTATCAAACCTGCAAACCCTAAAAATGGCAGAATCCTTACTAGGATCAGCACCTCCTCAAATGGCTGAGCAAGTGATGAACACCTTCGAGAACAAAAACCCTCTCAAGTTCCTCCCCCAAGACTTCGTTCCGATCCCATTTAAGACGATGAATATGTCGACCCTCTTCCCCAACATTCCCAGAAACGTCTCGTCTTCTTCTTCTTCTTCAGCCCTGCAACTCAGTACTTCTTCCTCTTCTTCTACCTTCAGCTACCTTCACGACTGTAAAAACGCCGCCCAAGTTTCTGGTCAAATACCTGCGATGTCGGCTACTGCGTTGCTACAGAAAGCCGCTCAAATGGGAGCCACTGCAAGCAATAGTATGAACTCACCCATGTTACAGAAAAGCTTCATTTCTAATACAATACCCGCTACTGATCACCAAATGATGATGGGAGGATCAGAAAATGAGAGGCGTAGAATTTTGAGAGATTCAGAGCAAGATGATTGTAACAGTTCCGGGATGGTTGGAGAGAAAGAGGGCAGCTGGTTTTTAAGATATGGAAGGAGTAGTTGGAGCAATGAGACGATGACTCTAGATTTATTGGGAAAAGGAGGGTCAAGGAAAGGAAACTTGAATCGGCAAGAAGACCAACAGAGGCAGGATTTGCCGATTTTAAATCCGTTTCAGGAAAAGATTTCGAGTGGAGAGTCGGGAATGGAGGAACCCGTTTGGGAGGTTTGA 1461 43.67 MSNITGEEGSFSSGNSGEEVVDLQEKKNKTAQNNPHGTSSGPSSDQQNQQAVKKKRSLPGTPGKFNYPPTINKLWALINPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTAEVKKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQEMMNNNSNMLPLSNLQTLKMAESLLGSAPPQMAEQVMNTFENKNPLKFLPQDFVPIPFKTMNMSTLFPNIPRNVSSSSSSSALQLSTSSSSSTFSYLHDCKNAAQVSGQIPAMSATALLQKAAQMGATASNSMNSPMLQKSFISNTIPATDHQMMMGGSENERRRILRDSEQDDCNSSGMVGEKEGSWFLRYGRSSWSNETMTLDLLGKGGSRKGNLNRQEDQQRQDLPILNPFQEKISSGESGMEEPVWEV 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15570678 15573145 - BLOR18489 Blo07g00557 63081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00557 486 Gene3D Classic Zinc Finger 80 143 - -
Blo07g00557 486 Coils Coil 222 242 - -
Blo07g00557 486 SMART c2h2final6 174 194 IPR013087 -
Blo07g00557 486 SMART c2h2final6 98 120 IPR013087 -
Blo07g00557 486 SMART c2h2final6 139 169 IPR013087 -
Blo07g00557 486 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 380 - -
Blo07g00557 486 MobiDBLite consensus disorder prediction 1 65 - -
Blo07g00557 486 SUPERFAMILY beta-beta-alpha zinc fingers 97 195 IPR036236 -
Blo07g00557 486 MobiDBLite consensus disorder prediction 27 55 - -
Blo07g00557 486 Gene3D Classic Zinc Finger 153 233 - -
Blo07g00557 486 MobiDBLite consensus disorder prediction 442 461 - -
Blo07g00557 486 MobiDBLite consensus disorder prediction 1 19 - -
Blo07g00557 486 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Blo07g00557 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Blo07g00557 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 380 - -
Blo07g00557 486 Pfam Zinc finger, C2H2 type 98 120 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00557 Blo-Chr7:15570678 Blo10g00983 Blo-Chr10:29046214 2.24E-104 dispersed
Blo07g00557 Blo-Chr7:15570678 Blo12g00911 Blo-Chr12:27295851 2.14E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12613 PF00096 zf-C2H2 0.0049 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00557 - - tcc:18613503 475.322