Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00854 ATGTCGGGAGGGGAATACGGCGATCACAGTCATATGCTTGTATCAACGGAGGCTCATGTCGAGGACAATGACTTGGAAGCTCCGATTAGAGATGGCGGCGCAGATGGAGTTCACAGCCACAATTACCGGAACGGCGGCGAAAGGTTAGGCGGAGGTTTTATGGATCTGTTTAAGCATTTGAATAAAGCGAGCTTTTCTAATCGCCGTCACAGTTTCAAGCGTCTCGATTGGGACGGCAATCCTGCTAATGAATCCGCATTAACCACGGGCAGAGGTATGAATAATCATCATTATCACTCTTATAATGATGATTTTCATCTTCATATTCATCATGCCCCGACTGTCACCACCGCCAGTGATGCCGACGCTGATGACGTGCTTGATGACTCCGCCCCTCCGGAATGGGCATTGCTCCTTGTTGGCTGCCTCGTTGGCCTCGCTACTGGTCTCTGCGTTGCTGCATTTAACAAAGGGGTGCACGTGATTCATGGATGGGCATGGGCTGGCACTCCAAATGAGGGTGCCGCTTGGCTTCGTTTACAGAGGTTGGCTGATACTTGGCATCGTATTCTCTTAATACCAGTCACTGGAGGTGTAATTGTTGGGATGATGCATGGCTTAGTTGAAATACTCTATGAAATTAAACAATCGAGTCCTTCTCAAAGGCAAGGATTTGATTTGCTTTTGGGAGTCTTTCCCACAGTAAAGGCCATTCAGGCAGCTATCACTTTAGGTACTGGTTGTTCATTAGGTCCCGAAGGACCTAGTGTGGATATTGGAAAATCTTGTGCAAATGGATTCTATGTGATGATGGAAAACAACAGCGAAAAGATAAAAATAGCCTTTGTTGCTGCTGGTGCAGCTGCAGGAATAGCTTCAGGTTTTAATGCAGCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTTTTAAGGCCTCAACGTGCTGAAAATTCACCACCATTTACAACTGCAATGATTATTCTTGCTTCTGTAATCTCTTCCACTGTGTCAAATGTTTTACTTGGGACACAGTCAGCTTTTACAGTTCCTACATATGATTTGAAGTCTGCTGCAGAATTACCTTTATACCTGATATTGGGCATGCTTTGTGGAGTTGTGAGTGTAGCTGTGACTTGGTTAGTCAGTTGGTTTCATAAATCATTTGAGCTTATCAAGGACAGATTTAGCCTCCCTGCTGTTGTCTGTCCTGCTGTAGGCGGTTTAGGAGCTGGAATAATTGCCCTCAAGTATCCAGGAATTCTTTATTGGGGCTTCACAAATGTTGAAGAAATCCTACATACTGGAAAGAGTGCCTCTGCTCCTGGAATATGGCTATTAACTCAATTAGCAGCAGCAAAGGTTGTTGCAACTGCTCTATGCAAGGGTTCCGGGCTTGTGGGTGGCCTTTATGCCCCAAGTCTAATGATTGGTGCGGCCGTTGGTGCTGTATTTGGAGGTTCAGCAGCTGAAGTTATCAACTCTGCCATTCCTGGAAATGCAGCTGTTGCACAGCCTCAAGCATATGCACTGGTTGGAATGGCTGCTACACTCGCTTCAGTTTGTTCAGTGCCCTTGACATCAGTTCTACTTCTCTTTGAGCTGACAAAAGATTACAGGATTCTGCTTCCTCTCATGGGAGCTGTTGGATTAGCTATATGGGTTCCTTCAGTGACAAAGCAAGCAAAGGAGATTGAACCTTCTGAAAGTCGTAGCTCTGTCAGAAACTACTCTCCTCTTTCTCCTTCTGCACGTAAACTTGATATTACAAGGAGACGAAATGATGCAAGCAATGATTTGGAACTCTCAATGATTGGAAATGTATCAGACAGTGAAACAATTGATGAAGATATTCTTATGGAAGATTTTAAGGCTTGTTTTCTGTCTTTTATTATCGATTGTTCTCTAAAACTATTGGTGTCTCAGGCCATGTCGAAGAACTTCCTTAAGATTCCATTGTCAACAAGCTTGAAAGATGCATTGAAATATATGAATGAATGTCAACAGAAGTGTGCTCTAGTGGTTGATGATGGAGATTTTCTTGAGGGAATCTTAACAAATGGTGACCTTAGACGGTGTCTTTCTAAACTGTCTGGCGAAGCTTCTTCCAAGGGGGATGCAAGTGTTGTGTCCTCTATTTGTACTAGAGGGATAAGTTATCGTGGCCGAGAACGTGGGCTTCTAACTTGTTACCCAGACACTGATTTGGCAACGGCCAAAGAGCTAATGGAGGCTAAGGGTATAAATCAGTTACCTGTCGTAAAGCGCGGTGGAGCATCCAAGAAGCATTGGAAACGAAGAATTGTTGCTGTTCTCCCCTATGAATCAATACAGAATTGTCTCAGCACGCTTCGGCCTTCCCTTGAGCTTAGACTTCGGATAACGATGAGGTGTCTTGAGGTGTCTCAATCAACGGGAATCTTGGCTTGGCCAGGTCCCAACCCTGGCACGGCCAGGTTCGGCAGGGTACAATGGTTCATTCCATAA 2484 44.77 MSGGEYGDHSHMLVSTEAHVEDNDLEAPIRDGGADGVHSHNYRNGGERLGGGFMDLFKHLNKASFSNRRHSFKRLDWDGNPANESALTTGRGMNNHHYHSYNDDFHLHIHHAPTVTTASDADADDVLDDSAPPEWALLLVGCLVGLATGLCVAAFNKGVHVIHGWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLVEILYEIKQSSPSQRQGFDLLLGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYVMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGCFFAIETVLRPQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTWLVSWFHKSFELIKDRFSLPAVVCPAVGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQAKEIEPSESRSSVRNYSPLSPSARKLDITRRRNDASNDLELSMIGNVSDSETIDEDILMEDFKACFLSFIIDCSLKLLVSQAMSKNFLKIPLSTSLKDALKYMNECQQKCALVVDDGDFLEGILTNGDLRRCLSKLSGEASSKGDASVVSSICTRGISYRGRERGLLTCYPDTDLATAKELMEAKGINQLPVVKRGGASKKHWKRRIVAVLPYESIQNCLSTLRPSLELRLRITMRCLEVSQSTGILAWPGPNPGTARFGRVQWFIP 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26930143 26936835 - BLOR18786 Blo07g00854 63378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00854 827 Gene3D - 633 778 IPR046342 -
Blo07g00854 827 ProSiteProfiles CBS domain profile. 643 701 IPR000644 -
Blo07g00854 827 Pfam CBS domain 639 694 IPR000644 -
Blo07g00854 827 Pfam CBS domain 725 755 IPR000644 -
Blo07g00854 827 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 1 781 - -
Blo07g00854 827 PRINTS Chloride channel signature 288 307 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo07g00854 827 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo07g00854 827 PRINTS Chloride channel signature 236 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo07g00854 827 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo07g00854 827 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo07g00854 827 SUPERFAMILY Clc chloride channel 133 558 IPR014743 -
Blo07g00854 827 Gene3D Clc chloride channel 124 571 - -
Blo07g00854 827 SMART cbs_1 725 781 IPR000644 -
Blo07g00854 827 SMART cbs_1 646 694 IPR000644 -
Blo07g00854 827 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 1 781 - -
Blo07g00854 827 CDD CBS_pair_voltage-gated_CLC_euk_bac 643 776 - -
Blo07g00854 827 Pfam Voltage gated chloride channel 234 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo07g00854 827 CDD Voltage_gated_ClC 147 551 - -
Blo07g00854 827 SUPERFAMILY CBS-domain pair 629 756 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00854 - - - csv:101212254 1008.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00854 Blo10g00891 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00406 Blo-Chr15:5802220 Blo07g00854 Blo-Chr7:26930143 2.49E-122 transposed
Blo10g00891 Blo-Chr10:27891718 Blo07g00854 Blo-Chr7:26930143 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00854 Blo_Chr07 FPKM 2.524752 0.0 6.724264 9.300536 6.905207 0.0 4.600976 4.509257 9.77488 8.037769