Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00855 ATGGCTAAGGATACCTCCGGACTGTGCATAAAGCTCAAAATCCCGAAAAGGCTGAAACCACCTGAAAATCTCCGAGAAGAAGAAGAAGAAGATTTGTCGCAGAAATCACAAGCTTTTTCCCGAGTCTGCCATATCTGCAACAAAGGGTTCAGCTCCGGAAAAGCTTTGGGAGGCCATATGAAAATGCACGTTCGGGCCCTGAAAAAGATTACTGACGACCAAGAAACCTGCGAACTCTACAATAATGGTGGTCGGAGTGGCAAACATGTTTGTTTTTCTTGCCAGAAAGTTTTTCCGTCGAAGAAGTCGTTATTTGGACATATGCGGTCTCATCCCGAAAGATCGTGGAGGGGAATTCAGCCACCGGCGGTTGCGAATCGGCACAGTTCGTCGTCGACTCTTTCTGATGTGGATTCTCCAGAGTATAAATTCGATGATCGGATTGATACAGCTGGTACTACAAGAGCTCCTGCGATGGACTTGTCGAGGTCACTTCTGGGTTGGTCAGTCACTGCCAAAAGAGGCCGGAGAAGCATTTCTTCCGCAGCCTCTTCTGATTCCAGCTCCAACCGACGTAAAAACATCTCCGATAAAGAGATTTCAGGCAAAATAGAAGATGAAAACCCAGAGCTTAATATGAGCAGAAGAAAGCTGAGGAAAAAGAAGGGTAAGAAGATGAGATTAGCTGATTTGGATACACAAGAAGCTGTCGCCGGAGAAGCGAAGAAGACGACTCTGAAACAACGTCAGAATAATAACACATACAGATGCAGTACTTGCAGCAAGACATTTTCAACCCACCAAGCCTTGGGCGGCCATAGGTCGAGCCACAACAAAGGGAAGAACGTTTCCGACCTTGAAGCTCAGGCTGAAGCTAAAGTGAGAGAGGAAGACAGCGAAAGAGGAAGAAAGATCCTAGATTTCGATCTCAACAAGCTTCCATCTCTGAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTATTAAAAATGGCGATTTTTATGGTTTTTTATACGATCATAGTTAA 1029 45.0 MAKDTSGLCIKLKIPKRLKPPENLREEEEEDLSQKSQAFSRVCHICNKGFSSGKALGGHMKMHVRALKKITDDQETCELYNNGGRSGKHVCFSCQKVFPSKKSLFGHMRSHPERSWRGIQPPAVANRHSSSSTLSDVDSPEYKFDDRIDTAGTTRAPAMDLSRSLLGWSVTAKRGRRSISSAASSDSSSNRRKNISDKEISGKIEDENPELNMSRRKLRKKKGKKMRLADLDTQEAVAGEAKKTTLKQRQNNNTYRCSTCSKTFSTHQALGGHRSSHNKGKNVSDLEAQAEAKVREEDSERGRKILDFDLNKLPSLNEEEEEEEEEEGIKNGDFYGFLYDHS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26938815 26940068 - BLOR18787 Blo07g00855 63379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00855 342 MobiDBLite consensus disorder prediction 176 209 - -
Blo07g00855 342 ProSitePatterns Zinc finger C2H2 type domain signature. 257 277 IPR013087 -
Blo07g00855 342 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Blo07g00855 342 Pfam C2H2-type zinc finger 42 63 - -
Blo07g00855 342 Pfam C2H2-type zinc finger 89 113 - -
Blo07g00855 342 Pfam C2H2-type zinc finger 255 279 - -
Blo07g00855 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Blo07g00855 342 MobiDBLite consensus disorder prediction 124 138 - -
Blo07g00855 342 Gene3D Classic Zinc Finger 17 115 - -
Blo07g00855 342 MobiDBLite consensus disorder prediction 176 190 - -
Blo07g00855 342 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 5 320 - -
Blo07g00855 342 MobiDBLite consensus disorder prediction 109 139 - -
Blo07g00855 342 SUPERFAMILY beta-beta-alpha zinc fingers 89 277 IPR036236 -
Blo07g00855 342 SMART c2h2final6 89 111 IPR013087 -
Blo07g00855 342 SMART c2h2final6 41 63 IPR013087 -
Blo07g00855 342 SMART c2h2final6 255 277 IPR013087 -
Blo07g00855 342 MobiDBLite consensus disorder prediction 278 301 - -
Blo07g00855 342 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 5 320 IPR044653 GO:0003700
Blo07g00855 342 MobiDBLite consensus disorder prediction 191 209 - -
Blo07g00855 342 Gene3D Classic Zinc Finger 234 312 - -
Blo07g00855 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 282 IPR013087 -
Blo07g00855 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 63 IPR013087 -
Blo07g00855 342 MobiDBLite consensus disorder prediction 268 301 - -
Blo07g00855 342 MobiDBLite consensus disorder prediction 313 342 - -
Blo07g00855 342 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00855 - - - nta:107769794 144.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00855 Blo10g00890 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00855 Blo-Chr7:26938815 Blo04g01361 Blo-Chr4:31652117 6.84E-08 dispersed
Blo10g00890 Blo-Chr10:27877630 Blo07g00855 Blo-Chr7:26938815 2.95E-133 wgd
Blo02g00119 Blo-Chr2:890731 Blo07g00855 Blo-Chr7:26938815 3.53E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g786 . . . . Bpe09g00097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00855 Blo10g00890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005208 1 0 1 1 1 2 0 2 2 2 2 2 0 2 2 0 2 1 0 1 3 0 2 0 0 1 0 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12638 PF13912 zf-C2H2_6 4.50E-09 CL0361 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00855 Blo_Chr07 FPKM 5.372508 4.697756 7.521374 9.532772 5.26756 4.188577 5.472703 9.801866 9.798319 13.955838