Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00858 ATGTCATCATCCGATAGTCGGCTGTCGGTAGAGTCGTCTTTAGGAGAATTCGATCGTGTTCCCACCGATGTTCTACTGAAGATACTGCGCTTGATTGGGCCAAAGGATGCGGCCAAAATGAGTTTGCTATCCACCTCTTGGAAGTCTCTGGTTTCGGATGAACGCCTTTGGATTTTCCTCCTTCAGGCTCATCAAGAGTCTTGGGACTCAATCTACTTTGGGGAAACCACTTTAGCATGGGGTTATCCTCTTCAAACATGTTCCAATCAGACGCAACAATTGTCATTCATGCAAATTTACAGAAAACGGGCACAAGTACCCGGTTCTGTTATTATTGATGGTGGCTCTGGCTATTGCAAATTTGGTTGGAGCGAATATGCTTGTCCATCTGGGCGATCTGCAACCTTTTTGGAGTTTGGTAACATTGAGTCACCTATGATGCGGGTCAAACCATCATTGCACCCAGTAGTTGTATCAATACCGATCTGTCATTACGATGATACTGAATCAGCTATAGCATCTAGTAGGCAACTCAAAGAAGCCATTCACACTGTGCTTTTTGACATGAATGTTCCTGCTGTTTGTGCTGTTAATCAGGCAGTTTTAGCCCTATATGCTGCGAGAAGAACATCAGGAATTGTGATTAATATTGGATTCCAAGTTACATCTGTTGTTCCAATTTTTCATGGTAAAGTGATGCGCAAGGTTGGGGTTGAAGTTGTGGGTCTGGGAGCACTAAAAATTACTGGATTCCTCAGGGAGCTGATGCAACAAAACAATATATACTTTGAATCAATGTACACAGTTCGTGCACTTAAAGAGAACCTTTGTTATGTTGCTGTTGATTATGAAGCTGAATTATTGAAAGATACAAAAAGATCATATGAAGCTGCCGGAGAAGGTTTGTTCACTCTGTCAAAAGAGCGATTTCAAGCTGGAGAGATTCTTTTCCAGCCACGAATGGCAGGACTCCGTGCAATGGGCTTGCACCAAGCTGTAGCTCTCTGTATAGACCATTGTTATGAAGCTGAATTGGCAGGCGATGATTCTTGGTTCAAGACGGTAGTTTTATCAGGTGGAAGTGCTTGCTTGCCCGGTCTTGCAGAGAGGTTACAGAAGGAACTTTGCCAACTTCTTCCTCCAGCTGTTTGCAATGGTTTAAGAGTCCTTCCTCCTCCATACGGTGCAGAATCCGCATGGTTTGGCGGGAAACTCATAAGCAATCTAAGCGTCTTTCCTGGTCCCTGGTGTACAACGAAGAAGCAATTCCGGCAGAAATCAAGACAGAACATTGTATGGTGA 1302 43.86 MSSSDSRLSVESSLGEFDRVPTDVLLKILRLIGPKDAAKMSLLSTSWKSLVSDERLWIFLLQAHQESWDSIYFGETTLAWGYPLQTCSNQTQQLSFMQIYRKRAQVPGSVIIDGGSGYCKFGWSEYACPSGRSATFLEFGNIESPMMRVKPSLHPVVVSIPICHYDDTESAIASSRQLKEAIHTVLFDMNVPAVCAVNQAVLALYAARRTSGIVINIGFQVTSVVPIFHGKVMRKVGVEVVGLGALKITGFLRELMQQNNIYFESMYTVRALKENLCYVAVDYEAELLKDTKRSYEAAGEGLFTLSKERFQAGEILFQPRMAGLRAMGLHQAVALCIDHCYEAELAGDDSWFKTVVLSGGSACLPGLAERLQKELCQLLPPAVCNGLRVLPPPYGAESAWFGGKLISNLSVFPGPWCTTKKQFRQKSRQNIVW 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26992515 26999967 + BLOR18790 Blo07g00858 63382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00858 433 CDD NBD_sugar-kinase_HSP70_actin 110 240 - -
Blo07g00858 433 Gene3D Actin; Chain A, domain 4 243 326 - -
Blo07g00858 433 SMART actin_3 107 423 IPR004000 -
Blo07g00858 433 Gene3D - 147 425 - -
Blo07g00858 433 Gene3D - 6 81 - -
Blo07g00858 433 SUPERFAMILY Actin-like ATPase domain 209 420 IPR043129 -
Blo07g00858 433 Pfam F-box domain 17 58 IPR001810 GO:0005515
Blo07g00858 433 PANTHER ACTIN 72 430 IPR004000 -
Blo07g00858 433 SUPERFAMILY Actin-like ATPase domain 109 215 IPR043129 -
Blo07g00858 433 Gene3D - 200 398 - -
Blo07g00858 433 SUPERFAMILY F-box domain 7 83 IPR036047 GO:0005515
Blo07g00858 433 Pfam Actin 169 421 IPR004000 -
Blo07g00858 433 ProSiteProfiles F-box domain profile. 14 60 IPR001810 GO:0005515
Blo07g00858 433 PANTHER ACTIN-RELATED PROTEIN 8 72 430 - -
Blo07g00858 433 SMART fbox_2 20 60 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00858 K16616 PARP8; actin-related protein 8, plant - csv:101218880 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00858 Blo-Chr7:26992515 Blo09g00434 Blo-Chr9:15322752 1.30E-40 dispersed
Blo07g00858 Blo-Chr7:26992515 Blo04g00958 Blo-Chr4:11695906 1.41E-40 transposed
Blo07g00858 Blo-Chr7:26992515 Blo05g00554 Blo-Chr5:11889754 1.47E-40 transposed
Blo07g00858 Blo-Chr7:26992515 Blo16g00535 Blo-Chr16:22174140 1.41E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006156 1 1 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 0 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00858 Blo_Chr07 FPKM 160.034485 173.686142 146.907272 140.767487 117.868843 115.588875 113.117157 276.535858 302.576965 273.884277