Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00860 ATGGCTTCCCCTGGCAACCTAAACCCAAATCAGCAGAACCCAGCTTTTGATGTGCCCAAGTTCTTTAAACCCCCGAATCAAAATCCTCTTCCCACCTCTCCCAGCCCTTCTAATTTGAATTCTTCACCCTTTCCTCCTTCTTCCTCTTATCCTCCTCCTACTGGTCCTTTTTCTTATCCTCTTCAGAACGTGCCATTTCATCACCAGTACCATCCTCACCTTGCCAACCAAATTCCTTTCCCTCAGGATCAGTACTCTAACCTGCACAATCAGAGATCACTTTCTTATCCTACACCTCCTCTTCAGCCATCTCCTCCGCATAATATCGCTATACCTCAAAACAGCCCTGCCCAGAACTCGGGTGCTCGAATAATGGCGATGATTAAAGCCCCTGGTGCAAACCTTGAACCGATTCCTCAGCCTTCTGCTCCTTTGGGTCCGATACCCTCTGCAGGGGTTCCTGAATTTTCAGGGCCTCCGGGTGGCCCTATGATGACCACTATCCCTATGTTGCAGGGCATCAGTCCAGTCATCGCCGCCCCTGGTCCCGTTCGAATGCCCAGCAATAAGCTTCCGAAGGGGCGGCACCTGTTTGGTGATAGTGTGGTGTATGATGTAAATGTCAGGTTGCAAGGGGAGGTTCAGCCACAGCTTGAAGTTACCCCGATAACGAAGTACGGTTCGGATCCTCAGCTGGTCTTAGGACGACAAATAGCTGTCAACAAGACTTACATATGCTATGGCTTGAAACAGGGAAATATTCGAGTACTTAATATCAACACTGCTCTGCGAGCTCTATTCCGGGGGCACGAAAAGAGGGTCACAGATATGGCATTTTTCGCGGAGGATGTTCACCTTTTGGCTAGTGTCGACATAGGTGGGCGGGTTTATGTATGGAAGATTTCTGAGGGCCCAGATGAAGAAGGCAAGCCACAAATCACAGGAAAAGTTATTATGGCTATTCATATTGAACGAGAGGAGGACGTTGTTCATCCACGAATTTGTTGGCATTGTCACAAACAGGAAGTTTTGGTTGTTGGCTATGGGAAGTCTGTGTTGAGGATTGATACTACTAAAGTTGGGAAGGGTGAACAATTTACTGCCGAAGTTCCACTTAAAGTTTCTCTCGACAAGTTAATAGATGGAGTGCAGCTTGTTGGTAAACATGATAAGGAAGTGACTGAGTTGTCCATGTGCCAGAATAAGTTGGCTGCATCTAAAGTTGACATAATGGAAACCATTACTGAATTGCCTAAAGAATCACTGGAGGCAGCTGTATCAAAGGAGGAAGGAGATAGAGTAGTCAGTATTAAGATTTGGGATGATCGCAAAGTTCTACCACTTGTGGTATTGAAACCACATGAAGGCCACCCTGTTAATGCAGCTATCTTTTTAACTGCTCCACATCGGCCAGATCACATTATTCTTATAACAGCGGGCCCTCTCAACCGAGAAGTGAAGGTCTGGTGTTCTGCAAGTGAGGAGGGGTGGCTCCTGCCTAGTGATGTTGATTCTTGGAAATGTACCCAGACACTGGAATTGAAGGGTTCAGCTGAACATCAAGTTGAAGAGGCATTTTTCAATCAAGTTGTAGCATTGTCTCAGGCAGGTCTTCTTTTGGTCGCTAATGCAAAGAAAAATGCGATATATGCTGTACACATAGATTATGGCTCTAATCCTGCCACAACGCGCATGGATTACATAGCAGAGTTTACTGTCACTATGCCGATTTTGAGTTTTACTGGAACCAGTGAAATATTAGATCGTAGTACACATATTGTCCAGGTTTATTGTGTCCAAACTCAAGCCATTCAGCAGTATGCTTTGGATTTATCCCAGTGCTTGCCTCCACCTTTGGAGAATGTCGTGGCAGAGAGAACAGAGTCAAATGTTTCTAACGATGCAATTAATGTTGATGGACTTGGATTGAGTTCACCTGTAAGTAAACCAAATGAGTTGCTCTTAACTGGTTCTGCAACCAAAGCAGGCTCCTTGTTAAATGACCCTGAGGGTCTTTCTGCAGAAAGATATCCCATATCCTCCATTTCTCTTGAGGCGACTTCCAGTGTTAACACAGATCCTCAACCTGTTTTACTGACATCAGCATCTAGTAATGCTGATATTGTATGTGTCCCATCACCTCCTCTACCTATGAGTCCAAGGTTATCGAGGAATTTGTCTGGTTTTAGAAGTCCGGCAACTAGCTTTGAGTCTATTTCTCAATTTAGTGATCATGGTAGTGACCAGCGAGTTAATGATTATCCAATTGACAGACAAATGGATGCCATTCATGCAAATTTATCTGATGTGCCAACCATAGGTGATGATTTGAGGAATATCGAGGAGAAAATTGCTCAAGAAGATCTGTCTGGTGTCCTCAGTCCTCCTATGATGTTTAGACATCCAACTCATTTGATTACTCCCTCTGAGATACTTATGGGTGCTTCTTCCTCTGATGCTACTACTATTGTTGAAGATAAGACTGAAGGAAACTCAACTATTCAGGATGTGGTTGTCAATAATGATATGAGTGGTGCTGAGTTAGAGGTTAAAGAGGTGGGTGAGATGAGGTCTACTGAAAGTAGTGAATATGACTCTTGGGGTGAACCTCGGAACGTATCAACAGAAAGTAAGGAGAAATTGTTCTGCTCCCAGGCTTCAGATCTTGGTATTGAAGTGGCCAGGGACTGTTGTGCAATATCATCGGAAACTTACATAACGGATGAAGCTCAACAAGTTGTTTCTATGAACTCATTGATTGTACCTACTCATGGTAGTGAAGAAGACCAAGCGGCTACAAAAGATGTGTGTGAAAAAGTTCCGGATTCATCTGCATCCATAATAATTCCACAGATAGCCACACCAAGTACTAAGGGGAAAAAGCATAAGGGTAAAAATTCTCAAACGTCTGGTCTGTCTTCTCCATCTCCAAGTGCTTTGAACTCAATAGATCTATCCAATGAACCTTCTTCAAGTTTTCCTTCTGTTGAAAGTGTGTTTCCTCAAATGTTGGCAATCCAAGATACAATGCATCAGCTCATGGCAACGCAAAAAGAGTTGCAGAAGCAGATACAGATGCTAGTGGCTGTTCCAGTTACGAAAGAAGGTAAGAGACTGGAGACAGCTTTTGGGCGGAGCATGGAGAAGACTTTGAAGGCCAATAATGAGGCTTTATGGGCTCGATTTCAGGAAGAAAATGCAAAAAATGACAAGTCTCTGCGGGATTGTACGCAAAAGATAACTACTGTGGTAAATAATTTTATGAATAAGGACTTGCCCACGTTGTTAGAAAAGGCAGTGAAGAAAGAAATGGCGGCTATTGGACCAGCTGTGGTTCGGACAATCACTCCAGTTATAGAGAAAACAATATCTTCATCTATTATTGATTCTTTCCAGCAGAGAGGCGTCGGTGATAAGGCAGTGAATCAACTGGAAAAATCTGTTAATACAAAACTCGAAGCTACTGTTGCGAGGCAAATTCAATCACAGTTTCAAACTTCTGGCAAGCAAGCTCTGCAGGAAGCTTTGAAATTAAATTTGGAAGCTTCAGTGATTCCTGCTTTTGAGATGTCATGCAAATCAATGTTTGAGCAAATCGATGCTACCTTTCAGAAAGGAATGGGTGAACATACTGCTGCTGTTCTGCAGCACGTCGAGTCTGCTCATTCTCCGTTGGCAACGGCATTAAGGGACGCGATTAATTCTGTATCAACAGTTAGTCAGTCTTTGAGTGGAGAATTGGCCGATGGTCAACGAAAACTGATAGCTCTAGCAACTGCCGGAGCAAATATCAGTTCAATGAATCCATTGGTTTCTCAACTGAGCAATGGGCCTCTTGGTGTCCATGAGAAGGTTGAGGTTCCTTTGGATCCAACGAAAGAGATCTCTAGGCTTGTGTCTGAACGAAAATATGAAGAAGCTTTCACTGCAGCTTTACAAAGAAGTGATGTGTCCATTGTATCTTGGTTATGTGCTCAGGTTGATCTTCGGGGAATTTTGACCATGGTGCCTGTCCCATTGAGTCAAGGAGTATTGCTCTCGCTTCTGCAACAATTGGCGTGTGACATCAACAAGGATCGGGGTCAAAAAGTATCTTGGATGACTGATGTGGCAGCGGCCATAAACACTGGGGATCCGATGATTGCAGTTCATGTCCGTGATGCTTTTAATGAAGAATTTGTACCAGTGGAGGAGGAGGCGTTCCAGGATGATCCCTCATATCTCTCTGAGTTACTTGCTGAGCGTCTTAAACTTAGTCCATTTATGCCTGTGTTACCCCATAGCTATGGCTTGTTAAACCAAGCAGAAATATTGCGTGTAACCACAATGTTGGGGAATGCATCAGTTTTAGGTCAAAGTGGGCTTGAACAAGCTAGTCCCTTGGCATCTGGAGGACTGTTTCTAAATGGAGGTGCAGATGTGGACGGATGGGCATCACGATTTCATTCAGAAATTTCAGGTTTGGTGCAAGGACCTGCACAAAACTGGCTCAGATCCCCTGGGATTTCTTCTGGTCTCATTGTCAAGAGAACTATAAGAATTGATATTCCTGTTGAAAAATATCCAAATTATAACTTTGTTGGGCGTCTCTTAGGTCCGAGGGGAAATTCTCTAAAGAGAGTGGAAGCAAGTACCAAATGCCGTGTTCTGATCAGAGGGCGTGGTAGCATTAAGGACCCTGGAAGGGAAGAGATGATGAGAGGGAAACCAGGATATGAGCATCTGAATGAACCTCTCCATGTACTAGTTGAGGGAGAGTTACCAGTTGAAATCATTGATGCCCGCCTGATGCAAGCCAGTGAGATACTCAAGGATTTGCTCAGGCCAGTGGATGAATCTTATGATTTCTACAAGAAACATCAACTTCGGGAACTGGCAATGCTTAATGGTACGCTTCGGGAGGAGGGTTCCCCAATGTCTGGTTCAGTGTCTCCTTTCCACAACAGCCTCGGGATGAAGAGGGCCAAGACTAGGGGCTAA 4980 44.18 MASPGNLNPNQQNPAFDVPKFFKPPNQNPLPTSPSPSNLNSSPFPPSSSYPPPTGPFSYPLQNVPFHHQYHPHLANQIPFPQDQYSNLHNQRSLSYPTPPLQPSPPHNIAIPQNSPAQNSGARIMAMIKAPGANLEPIPQPSAPLGPIPSAGVPEFSGPPGGPMMTTIPMLQGISPVIAAPGPVRMPSNKLPKGRHLFGDSVVYDVNVRLQGEVQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRALFRGHEKRVTDMAFFAEDVHLLASVDIGGRVYVWKISEGPDEEGKPQITGKVIMAIHIEREEDVVHPRICWHCHKQEVLVVGYGKSVLRIDTTKVGKGEQFTAEVPLKVSLDKLIDGVQLVGKHDKEVTELSMCQNKLAASKVDIMETITELPKESLEAAVSKEEGDRVVSIKIWDDRKVLPLVVLKPHEGHPVNAAIFLTAPHRPDHIILITAGPLNREVKVWCSASEEGWLLPSDVDSWKCTQTLELKGSAEHQVEEAFFNQVVALSQAGLLLVANAKKNAIYAVHIDYGSNPATTRMDYIAEFTVTMPILSFTGTSEILDRSTHIVQVYCVQTQAIQQYALDLSQCLPPPLENVVAERTESNVSNDAINVDGLGLSSPVSKPNELLLTGSATKAGSLLNDPEGLSAERYPISSISLEATSSVNTDPQPVLLTSASSNADIVCVPSPPLPMSPRLSRNLSGFRSPATSFESISQFSDHGSDQRVNDYPIDRQMDAIHANLSDVPTIGDDLRNIEEKIAQEDLSGVLSPPMMFRHPTHLITPSEILMGASSSDATTIVEDKTEGNSTIQDVVVNNDMSGAELEVKEVGEMRSTESSEYDSWGEPRNVSTESKEKLFCSQASDLGIEVARDCCAISSETYITDEAQQVVSMNSLIVPTHGSEEDQAATKDVCEKVPDSSASIIIPQIATPSTKGKKHKGKNSQTSGLSSPSPSALNSIDLSNEPSSSFPSVESVFPQMLAIQDTMHQLMATQKELQKQIQMLVAVPVTKEGKRLETAFGRSMEKTLKANNEALWARFQEENAKNDKSLRDCTQKITTVVNNFMNKDLPTLLEKAVKKEMAAIGPAVVRTITPVIEKTISSSIIDSFQQRGVGDKAVNQLEKSVNTKLEATVARQIQSQFQTSGKQALQEALKLNLEASVIPAFEMSCKSMFEQIDATFQKGMGEHTAAVLQHVESAHSPLATALRDAINSVSTVSQSLSGELADGQRKLIALATAGANISSMNPLVSQLSNGPLGVHEKVEVPLDPTKEISRLVSERKYEEAFTAALQRSDVSIVSWLCAQVDLRGILTMVPVPLSQGVLLSLLQQLACDINKDRGQKVSWMTDVAAAINTGDPMIAVHVRDAFNEEFVPVEEEAFQDDPSYLSELLAERLKLSPFMPVLPHSYGLLNQAEILRVTTMLGNASVLGQSGLEQASPLASGGLFLNGGADVDGWASRFHSEISGLVQGPAQNWLRSPGISSGLIVKRTIRIDIPVEKYPNYNFVGRLLGPRGNSLKRVEASTKCRVLIRGRGSIKDPGREEMMRGKPGYEHLNEPLHVLVEGELPVEIIDARLMQASEILKDLLRPVDESYDFYKKHQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 1659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27032089 27052434 - BLOR18792 Blo07g00860 63384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00860 1659 Gene3D - 1340 1401 IPR044938 -
Blo07g00860 1659 MobiDBLite consensus disorder prediction 140 161 - -
Blo07g00860 1659 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 24 1391 - -
Blo07g00860 1659 SUPERFAMILY WD40 repeat-like 241 560 IPR036322 GO:0005515
Blo07g00860 1659 MobiDBLite consensus disorder prediction 140 156 - -
Blo07g00860 1659 MobiDBLite consensus disorder prediction 1 15 - -
Blo07g00860 1659 Gene3D K Homology domain, type 1 1402 1639 IPR036612 GO:0003723
Blo07g00860 1659 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 24 1391 IPR045152 GO:0031087
Blo07g00860 1659 CDD SF1_like-KH 1511 1633 - -
Blo07g00860 1659 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 219 336 IPR032401 -
Blo07g00860 1659 Gene3D - 235 607 IPR015943 GO:0005515
Blo07g00860 1659 MobiDBLite consensus disorder prediction 966 994 - -
Blo07g00860 1659 SMART kh_6 1508 1604 IPR004087 GO:0003676
Blo07g00860 1659 MobiDBLite consensus disorder prediction 948 994 - -
Blo07g00860 1659 MobiDBLite consensus disorder prediction 1 64 - -
Blo07g00860 1659 SMART WD40_4 260 300 IPR001680 GO:0005515
Blo07g00860 1659 MobiDBLite consensus disorder prediction 24 59 - -
Blo07g00860 1659 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 1513 1633 IPR036612 GO:0003723
Blo07g00860 1659 MobiDBLite consensus disorder prediction 1636 1659 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00860 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 1876.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01020 Blo-Chr1:31393727 Blo07g00860 Blo-Chr7:27032089 7.03E-80 dispersed
Blo03g00288 Blo-Chr3:5766032 Blo07g00860 Blo-Chr7:27032089 8.09E-66 dispersed
Blo07g00860 Blo-Chr7:27032089 Blo09g00312 Blo-Chr9:13266042 7.82E-83 dispersed
Blo09g00162 Blo-Chr9:5119740 Blo07g00860 Blo-Chr7:27032089 9.21E-24 transposed
Blo10g00886 Blo-Chr10:27848193 Blo07g00860 Blo-Chr7:27032089 5.03E-145 transposed
Blo10g00884 Blo-Chr10:27829279 Blo07g00860 Blo-Chr7:27032089 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00860 Blo_Chr07 FPKM 2.374132 3.023486 37.292274 34.512341 1.160434 1.861241 1.770311 0.805822 1.197844 0.661581