Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00874 ATGGAATCCGATCTTGGGAAGCTCTTCATTGGTGGAATTTCTTGGGACACAGACGAAGAACGTCTTAAGGAATACTTTAGGAGATACGGAGAGGTTGTGGAGGCAGTGATTATGAGAGATCGAGCCACGGGTCGTGCTCGTGGATTCGGGTTTATCATTTTTGCAGATCCATCTGTTGCTGAAAGAGTCATTTTAGAGAAACATGTGATTGGTGGCCGCACTCTAGCTTGCAAAGACAGTCTCAAAGAATTTGAGAATTGCTTGTTTGTGGTTTTGTATGACTCCAACATTGAATTGCTTTTCCATCTCGTATATCACCTAGCGTTTACTTCTTACATTGTACAAGTTGAAGCAAAGAAGGCTGTTCCTAAGGAAGATCAGCACATATTAAGTAGGAACTTTGGTAGCAGCATTCAAGGTTCACCTGGTCTGGGACGAACCAAAAAGATTTTTGTTGGAGGTTTGGCATCTACAGTAACAGAGGGTGATTTCAAGAGGTATTTTGATCAATTTGGCACAATAACTGATGTAGTAGTGATGTATGATCATAACACGCAAAGGCCTAGGGGTTTTGGATTCATAACTTTTGACTCAGAAGAAGCGGTGGACAGAGTTTTACACAAATCATTTCACGAACTTTATGGTAAGATGGTTGAGGTCAAAAGGGCAGTCCCAAAAGAACTCTCTCCAGGGCCGAACCGAAGTCCTTTGGCGGGACATAGTTATGGTTTGAATAGAGCAAATAGTTTACTTAATAGTTATGCACGGGGTTATAATGTAGGTTCTGTTGGAGGTTTTGGAATTCGAATGGACAGGTTCAGTCCAACAACAAATGTACGTTCTGGCTTTTCTACATTTGGTACTGCTAATTATGGAATAGGCCTGACCTCCAATCCGGGATTGAGTCCAAGCTATGGAAGAAGTGCCAACTTTGGTAATATAGGGAATGGACAGGCAATGAACACTTATTACAATGGCAGTCCTGGTAGATACACAACACCCATTGGAGTTAACGGGGGCATTGGAAGGAATGATACTATCTTAAACTCAACAGCTCGGAATCTTTGGGGAAATGGGGTGTTAACTGGTTTGATGAATTCGTCTGTTTCTGGTCCTGATGGTGCATTTTTAGGATCTGGAAATGGGAGTTTTGGAGGAACATTTGGCAATAATGGACAGAGTTGGAGTTCCTCAGTTGTTTCTCAAGGCAGCGTAAAGGCTAGCATCGGATATGGAAATGGAGAAAAAAACTTTGGGTTTGGCTATGGAAGAAATAGTAATCCAGGCACAATCCCAAACTCTACGTTTTCTGCAGCAGCTGCTGGTTATGATGCTTCTTTTGGGGACTTGTACAATGGCAGTTCAGTTTATGGTGGCTCAAATTGGGAATCTGGAACTCATGACCTTGAAGGCTCTGACACTTTTGGATATGACCTTGGTAACATAACTTCTGATGTCTCGGCAAATAGTTCGGAAACTTTTATCGGAAATTACAATGTTTCAAGTAGACAGTCGAGTAGAGGTAACTCCCTGATCTCCCCTAATTAG 1548 42.12 MESDLGKLFIGGISWDTDEERLKEYFRRYGEVVEAVIMRDRATGRARGFGFIIFADPSVAERVILEKHVIGGRTLACKDSLKEFENCLFVVLYDSNIELLFHLVYHLAFTSYIVQVEAKKAVPKEDQHILSRNFGSSIQGSPGLGRTKKIFVGGLASTVTEGDFKRYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLHKSFHELYGKMVEVKRAVPKELSPGPNRSPLAGHSYGLNRANSLLNSYARGYNVGSVGGFGIRMDRFSPTTNVRSGFSTFGTANYGIGLTSNPGLSPSYGRSANFGNIGNGQAMNTYYNGSPGRYTTPIGVNGGIGRNDTILNSTARNLWGNGVLTGLMNSSVSGPDGAFLGSGNGSFGGTFGNNGQSWSSSVVSQGSVKASIGYGNGEKNFGFGYGRNSNPGTIPNSTFSAAAAGYDASFGDLYNGSSVYGGSNWESGTHDLEGSDTFGYDLGNITSDVSANSSETFIGNYNVSSRQSSRGNSLISPN 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27445258 27447316 + BLOR18806 Blo07g00874 63398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00874 515 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 509 - -
Blo07g00874 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 225 IPR000504 GO:0003723
Blo07g00874 515 Gene3D - 145 231 IPR012677 -
Blo07g00874 515 Gene3D - 6 85 IPR012677 -
Blo07g00874 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Blo07g00874 515 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 509 - -
Blo07g00874 515 SUPERFAMILY RNA-binding domain, RBD 148 292 IPR035979 GO:0003676
Blo07g00874 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 207 IPR000504 GO:0003723
Blo07g00874 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Blo07g00874 515 SMART rrm1_1 7 78 IPR000504 GO:0003723
Blo07g00874 515 SMART rrm1_1 149 221 IPR000504 GO:0003723
Blo07g00874 515 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Blo07g00874 515 CDD RRM2_DAZAP1 146 225 IPR034131 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00874 K14411 MSI; RNA-binding protein Musashi - qsu:111991870 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00134 Blo-Chr2:1146851 Blo07g00874 Blo-Chr7:27445258 6.53E-152 dispersed
Blo04g00632 Blo-Chr4:5530100 Blo07g00874 Blo-Chr7:27445258 6.79E-118 dispersed
Blo07g00874 Blo-Chr7:27445258 Blo15g00456 Blo-Chr15:6872562 3.02E-161 dispersed
Blo07g00866 Blo-Chr7:27167474 Blo07g00874 Blo-Chr7:27445258 9.58E-10 proximal
Blo13g00427 Blo-Chr13:24502820 Blo07g00874 Blo-Chr7:27445258 2.08E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46