Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00885 ATGTCAGAGAACGCCCGGCGCTCTGTTCTGAAAATCAGAACGGCAGAAATAAAGTTACTTAGTGTTTTCTATCTAATTTTGTACGGTGGATATCCTTTTACCAGAAGATGCTGTGCAGATCTTCCAATGAGTTTTGAAGACCGTGTTGCTGCTGTTAACATTGCCACTCAATTTCAGGAACAGAACAAACAAGTCTTTAAAATGGTTGAAGAAGAAACAGACTTTGCAAAAACTCAGGCATGTGTGCATGCAGAAGTTCCAGCCATTATCGTGTTTGGAGACTCTACAGTTGATGCTGGGAACAATAACCAAATCTCTACTGTTTTGAAGAGCAATTTCCCGCCGTATGGTCGCGATTTCAAAGAAGGCAGACCGACTGGAAGGTTCTCTAATGGCAGAATTTCAACAGACTTTATTTCTGAAGCCTTTGGCATAAAACCAACAATACCTGCGTACTTGGATCCTTCATATCATATTTCCGACTTTGCAACAGGAGTTTCCTTCGCTTCTGCCGGAACCGGTTATGATAATATGACATCTGCAGTGTTATCTGTATTACCTCTCTCGAAGGAACTGGAGTATTTCAAGGATTACCAAAAGAAGCTGAGAAGCCATCTAGGAAATAAGAAAGCTAATAAAATTCTCTCAGAAGCAGTATACCTGATAAGTGCAGGAACCAATGATTTCCTGGAGAATTACTACACATTTCCAGTAAGATCATCAGAGTTTTCTATTGAGCAGTACCAGAATTTTTTAGGAGAAATTGCAGGAGATTTTATCACGGAACTTCACCAACTCGGAGCCAGGAAAATTTCATTGACCGGTCTTCCTCCAATGGGATGTTTACCATTGGAGAGAACTACAAATTTCTTTCTTGGTAGTAGCTGTGTTGCTGAGTTCAACAATGTCGCCAAAGAATTCAACGGGAAGTTGAATGGAATAGTGATGAAACTGAACAAAGAGCTGAAGGGTGCCAAACTGGTTTTCTTAAACCCGTATAATATTCTACTAGAAATCATAAACCATCCTAATTCTTTTGGATTTAACCATTCAGCAACAGCATGTTGTGGAACAGGATACTTTGAGATGGGTTACATGTGTGACAGGATAAACCCATATACCTGTTCAGATGCTAGTAAATATGTCTTTTGGGATTCTTTCCATCCAACAGAAAAAACAAATAAAATTATTGCAGACCATCTGGTAAAAAATTACCTGTCTGAATTTCTGTGA 1233 39.25 MSENARRSVLKIRTAEIKLLSVFYLILYGGYPFTRRCCADLPMSFEDRVAAVNIATQFQEQNKQVFKMVEEETDFAKTQACVHAEVPAIIVFGDSTVDAGNNNQISTVLKSNFPPYGRDFKEGRPTGRFSNGRISTDFISEAFGIKPTIPAYLDPSYHISDFATGVSFASAGTGYDNMTSAVLSVLPLSKELEYFKDYQKKLRSHLGNKKANKILSEAVYLISAGTNDFLENYYTFPVRSSEFSIEQYQNFLGEIAGDFITELHQLGARKISLTGLPPMGCLPLERTTNFFLGSSCVAEFNNVAKEFNGKLNGIVMKLNKELKGAKLVFLNPYNILLEIINHPNSFGFNHSATACCGTGYFEMGYMCDRINPYTCSDASKYVFWDSFHPTEKTNKIIADHLVKNYLSEFL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27613391 27618663 + BLOR18817 Blo07g00885 63409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00885 410 SUPERFAMILY SGNH hydrolase 88 405 - -
Blo07g00885 410 Pfam GDSL-like Lipase/Acylhydrolase 89 401 IPR001087 GO:0016788
Blo07g00885 410 Gene3D SGNH hydrolase 75 406 IPR036514 -
Blo07g00885 410 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 76 409 - -
Blo07g00885 410 CDD SGNH_plant_lipase_like 87 405 IPR035669 -
Blo07g00885 410 PANTHER GDSL ESTERASE/LIPASE EXL3 76 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00885 - - - cit:102613070 514.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00608 Blo-Chr3:24742276 Blo07g00885 Blo-Chr7:27613391 1.22E-83 dispersed
Blo03g00611 Blo-Chr3:24821446 Blo07g00885 Blo-Chr7:27613391 3.29E-73 dispersed
Blo03g00971 Blo-Chr3:35782926 Blo07g00885 Blo-Chr7:27613391 1.01E-09 dispersed
Blo04g01223 Blo-Chr4:23330388 Blo07g00885 Blo-Chr7:27613391 7.40E-124 dispersed
Blo07g00885 Blo-Chr7:27613391 Blo08g00028 Blo-Chr8:246150 7.65E-92 dispersed
Blo16g00009 Blo-Chr16:511530 Blo07g00885 Blo-Chr7:27613391 8.10E-59 dispersed
Blo17g00543 Blo-Chr17:9465102 Blo07g00885 Blo-Chr7:27613391 3.85E-54 dispersed
Blo07g00885 Blo-Chr7:27613391 Blo01g01608 Blo-Chr1:55967121 1.82E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g568 . . . . . . Bma10g00574 . . . Cma01g01115 . Car01g00985 . . . Cpe02g00788 Bhi09g01691 Tan01g3119 . . Hepe01g1251 Mch11g1212 . . . . . . . . . . Cone14ag1177 Cone15ag1190 Lsi02g01883 . . . Blo07g00885 . Bda05g00700 . . . . . . Cmo01g01161 . . . . . . . . . . . . . . Cla09g01031 Cam09g1086 Cec09g1085 Cco09g1106 . . Cre09g1051 . . Chy01g01052 Cme01g01002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000811 2 3 2 3 2 3 3 3 3 3 2 3 4 3 3 4 3 6 3 3 3 3 3 3 3 4 3 3 3 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00885 Blo_Chr07 FPKM 4.113825 4.865009 9.316457 10.87735 52.605381 47.542416 49.842258 8.721036 7.792414 7.987594