Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00892 ATGGATCAATCTATCTATCACTTCAATCCAAGAAGCAGAAATTCATTCCCGATCACTACTTCCGCCGCCTCGCCGGGAATGGAACACTCTGTCCGAGCTGTAGAACGAATCGCTTGCTACAGTTTCCGGAATAAGAAGTTTCTAGAGGAGGCTCTTACCCACTCCTCCTGTCCTGGCTCGCCGTCTTATCAGCGGCTTGAGTTCGTCGGAGACGCCGTTCTCGCTATCGCTTTCAGCAACCACATTTTTCTTGCTTACCCTGAACTTGAGCCCGGTCAGCTCACTCCGCTTAGGGCTGCTAATATTAGCACCGAGAAACTTGCAAGGGTTGCGGTGCGCCATGGGTTATATCAGTACGTGAAGCGCAATGCCGCTGCTCTTGATGATAGGGTTTGGGTAATCAGAATTGAAGTTTTGGTTTGTTATCTTCTTTTACAAATGGTTGATGGGAAATTTGATGATGAGTGGGGAAGTCGTGGGGATGATGTCAAGGAGGTTTTGCACAATTTCAAACCTTTTGTATCTTTTGCTATCTTTACAATACATGTTAAAGAATTTACAAATGCAATTCGTGAAGAAGGGGATGCAGTTGCACATGGTGGGTCCATGAAGGCTCCTAAGATTCTTGCTGACATTGTAGAGTCATTAGCAGCAGCTATTTATATGGACTTGAACTTTGATTTACATAGAATGTGGTTGGTTTTTAAGCATCTGTTAGAACCAATCATTACTCCTGAAGACTTGAAGCAACAACCTCAGCCCATCACCAGCTTTTTCGAGCTTTGCCAAAGACTTGGAAAGCAAATAGATATTAAATATTGGAAAAACGATGACAAGAACATTGCAAGTATATATGTGGACGATAAATTCGTTATATCGGCTTCTTCGGAACAAAAGGACATCGCAAAGCTTAATGCTTGCAAGGCAGCTTTTGAAAAGTTGTCAAAATACGTTCCATTAGATGATAAAACCAATGGAGTACTCAATAACATTGATGGATCTCTTGATATTGATGGAGCAAAACATATATTAAATGAGATTTGTTCCAAAAGAAAGTGGCCGAAACCAAATTACAGCATTGAGAAGGACAGAGGACCATCACACGAGAAGAAATTCGTATCATCTGTTCAAATTGCTGCCACCGAGGGCATTCTTTGTATGACTGGAGACGAAAAGTCGCGAATAAAGGATGCTCATAATTCCGCTGCCTCTCTGATGATCCGAGCCTTACAAGAAGCACAAATTTTGAGCGATTTCGAAAGTTCTATTTTTCCTTGTGTTATTTGGAAGTGGAATGATTATGTACTCTGTCTACTGTGGGATTGA 1326 41.86 MDQSIYHFNPRSRNSFPITTSAASPGMEHSVRAVERIACYSFRNKKFLEEALTHSSCPGSPSYQRLEFVGDAVLAIAFSNHIFLAYPELEPGQLTPLRAANISTEKLARVAVRHGLYQYVKRNAAALDDRVWVIRIEVLVCYLLLQMVDGKFDDEWGSRGDDVKEVLHNFKPFVSFAIFTIHVKEFTNAIREEGDAVAHGGSMKAPKILADIVESLAAAIYMDLNFDLHRMWLVFKHLLEPIITPEDLKQQPQPITSFFELCQRLGKQIDIKYWKNDDKNIASIYVDDKFVISASSEQKDIAKLNACKAAFEKLSKYVPLDDKTNGVLNNIDGSLDIDGAKHILNEICSKRKWPKPNYSIEKDRGPSHEKKFVSSVQIAATEGILCMTGDEKSRIKDAHNSAASLMIRALQEAQILSDFESSIFPCVIWKWNDYVLCLLWD 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27683916 27687040 - BLOR18824 Blo07g00892 63416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00892 441 Pfam Double-stranded RNA binding motif 254 314 IPR014720 -
Blo07g00892 441 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 339 412 IPR014720 -
Blo07g00892 441 SMART riboneu5 46 248 IPR000999 GO:0004525|GO:0006396
Blo07g00892 441 CDD RIBOc 46 248 IPR000999 GO:0004525|GO:0006396
Blo07g00892 441 PANTHER DICER-RELATED 32 407 - -
Blo07g00892 441 SUPERFAMILY RNase III domain-like 28 245 IPR036389 GO:0004525|GO:0006396
Blo07g00892 441 Gene3D - 338 413 - -
Blo07g00892 441 Gene3D Ribonuclease III domain 22 246 IPR036389 GO:0004525|GO:0006396
Blo07g00892 441 ProSiteProfiles Ribonuclease III family domain profile. 31 225 IPR000999 GO:0004525|GO:0006396
Blo07g00892 441 ProSitePatterns Ribonuclease III family signature. 64 72 IPR000999 GO:0004525|GO:0006396
Blo07g00892 441 Pfam Ribonuclease III domain 64 223 IPR000999 GO:0004525|GO:0006396
Blo07g00892 441 SUPERFAMILY dsRNA-binding domain-like 338 416 - -
Blo07g00892 441 SUPERFAMILY dsRNA-binding domain-like 207 319 - -
Blo07g00892 441 SMART DRBM_3 340 411 IPR014720 -
Blo07g00892 441 SMART DRBM_3 254 315 IPR014720 -
Blo07g00892 441 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 340 411 - -
Blo07g00892 441 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 32 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00892 - - - mesc:110601289 421.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00892 Blo-Chr7:27683916 Blo12g00202 Blo-Chr12:13086125 4.94E-08 dispersed
Blo13g00411 Blo-Chr13:23863346 Blo07g00892 Blo-Chr7:27683916 5.04E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00892 Blo_Chr07 FPKM 0.583452 0.639553 0.0 0.393104 2.403586 3.873611 3.733998 0.650488 0.68161 0.364112