Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00898 ATGGAGGAGGCCTCCTTTGTGTCCAAAGCGAGGACCGCTTTTCATTCAGCGGCAGCTAAAGCGGAGCGTGTTTTCACAGATTTCAAATCTGATCGAGGAGATTCTGATAAACAGTCGCCAAAGGATTTGTTAAATCGAGCCGAGGTTGAGTATCAGAAGAAGAACAACAATAAAAAGTGTGACAGTGAATCGAAGCAGTCCAGCTGGACTCACGTTGGCACCAAACAAGATTGGCAAGATAGGTTCAAGAATATTAAATTAGGGAGGAAAATAGTTGAGGATACAGAGAAAAGTGAAGATTCAGCTATGGCCGTTCCATTTTATGATGAGAATTTGTATCTGCTGAACATGAAAAATGATCTTGAGGCAAAGGTTTCTGAAGTGATTCCATCAGTGGAAAGTTTTATAGCTGCCAGTGGAAAGAGTGTTCCCCCCATTTATGTGCTGAAGCAATTGGCAATAGCTGTGGAGGCTGGCAAAAAATACAAGTCGATGAAAGATTTACTTGCATCATCTGGAGATTCTTCACCTGCTAGGGAGAGATCTGGTTTAAGTCTCGCAGCAATGAAGTCATTACTGCTGCGGGATAAGGAGGAAAGGTTTTCAACTGAGTTTGCTAAAGAGGATAGAGTTAATTTACTAATTCAATCTCTATTTGATGCAGATGGAAATTTTCTTGACAGGAATTTTGGCTCTGCAATAGAAGACATCGCGTTTACATCTTTGCACAAAGATATTCATGGTTCTCCTCCCCAAAGCCTAATTGTTAAGATATCTGAAGTCATGGGAAGCTTCAAAGCAATGCGAAAAATGGCACTTTTTTGGTGCAAAGCTGTTACTGAAATGAGACGACTTTGGTCTGAAGGGCAGTATATACCATGCATTCCTAAAGATGATATCCTAGATCTACATTCCTGTCTTTTATACCAGCAATTCCAGGTCATCAATTGTTGCCTTTCTAGGAAAAGGCGTCGTGATATAGCGACTGAATCATTAGACTCTGTGATAAGTAAGGCAAGTTCTGATGCGGAATTGGATGTTTCACAAGTTATAGATCCTGTAAGGCCCATATTATATGCCAGAATAAGCACTGGGGAACTCATTCTTCGATTAGGAGCTGCTCAACCATTTAATAACCTAAACATGTTGGAAACTGGCGAACCTGTGTATTCTCCCATTACTCAGGAAGAGCCGTTGCTTACAGAAGATGTTATTAAAGAAACAGAGGAATTTGTTCTTCGTACTGGGAGTGTTGGGGCCGGATGTTCTCAACTTCTCTCGGACATGCAGGCTTTCAAGTTCCTATCATTCATATCACTTGAGTTTTATTTGACTACTTTCCTATGTGTTGGTTTAGGTCTTGTCATTGCAGAATCTTTATTGTCCCATCATAGCAACTTCTCGAAGTTTTTCTATGAATGCAAGGACTATGTTGTTGCCTCTTTTCAAGGTGGCCTATGGAGTGAAAAAGTTAACGATATTTGTGAGGTCTATGAAACAGTGGAGGCAATGTTAGTGAATCCAGACGAAGTCCTGAAAATGTTTAAGCAGCCGGAAACAGAAACAGCTGAGATTTCAGGCGAGACTAAACTCCGTTTTAAGAGACTCAGTCTCAAATTTGGTAGTAACGATAAAAGCTCAAAAAAATCGACGGCAAAATATTTGAAGAATGGGCAACCTTTTTCAACTTTCTTTGACAGAAAATCATCTTTATTTTCCTCCAAAGCCAGAAATCCCCACTCCGGCTGA 1749 40.48 MEEASFVSKARTAFHSAAAKAERVFTDFKSDRGDSDKQSPKDLLNRAEVEYQKKNNNKKCDSESKQSSWTHVGTKQDWQDRFKNIKLGRKIVEDTEKSEDSAMAVPFYDENLYLLNMKNDLEAKVSEVIPSVESFIAASGKSVPPIYVLKQLAIAVEAGKKYKSMKDLLASSGDSSPARERSGLSLAAMKSLLLRDKEERFSTEFAKEDRVNLLIQSLFDADGNFLDRNFGSAIEDIAFTSLHKDIHGSPPQSLIVKISEVMGSFKAMRKMALFWCKAVTEMRRLWSEGQYIPCIPKDDILDLHSCLLYQQFQVINCCLSRKRRRDIATESLDSVISKASSDAELDVSQVIDPVRPILYARISTGELILRLGAAQPFNNLNMLETGEPVYSPITQEEPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKFLSFISLEFYLTTFLCVGLGLVIAESLLSHHSNFSKFFYECKDYVVASFQGGLWSEKVNDICEVYETVEAMLVNPDEVLKMFKQPETETAEISGETKLRFKRLSLKFGSNDKSSKKSTAKYLKNGQPFSTFFDRKSSLFSSKARNPHSG 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27853954 27866845 - BLOR18830 Blo07g00898 63422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00898 582 MobiDBLite consensus disorder prediction 51 72 - -
Blo07g00898 582 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 4 433 - -
Blo07g00898 582 Pfam Rab3 GTPase-activating protein catalytic subunit 370 433 IPR026147 -
Blo07g00898 582 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 445 576 IPR045700 GO:0005096|GO:0043547
Blo07g00898 582 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 4 433 IPR045700 GO:0005096|GO:0043547
Blo07g00898 582 MobiDBLite consensus disorder prediction 51 65 - -
Blo07g00898 582 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 445 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00898 K18270 RAB3GAP1; Rab3 GTPase-activating protein catalytic subunit - csv:101202869 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01182 Blo-Chr3:38096020 Blo07g00898 Blo-Chr7:27853954 3.17E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g534 . . . . . . Bma10g00556 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1155 Cone15ag1172 . . . . Blo07g00898 . Bda05g00713 . . Bpe03g00786 . . . . . . . . . Cpe14g00745 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003785 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 7 5 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00898 Blo_Chr07 FPKM 111.469543 114.267784 171.825104 158.852493 173.990341 200.815262 155.336884 311.016724 307.771759 303.825348