Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00899 ATGACTGACACGCGAACATTCCTTGCTATGTACATCACTACATCTCAATTAAGTGTACATCTGGTTCATTTGAAGCTTCTACTAGGCAAATTTCACAATCGTAATGTGGCATGCGCATTTAATATTGTGGGAATTTCTTACTATGACTCTAGTATTCGCCAACTTCATGTGCTGGAAGTTTGGGAAGACAGTAGAACAGATTTCCCCTTGATTGATCTGGTTAAGTATCAAGCTAAGCCCCTGATAATTTACACAAGCACTAAATCTGAAGAATCCTTATTATCTGCTCTACAGCGTAGTGATGGCACAAGTGAGGCTCCACAAGTGAAACTGGTGAAAAGTTCAATATTTAGCTATGAGCAGGCCTGGCACAGATTGATATACCTTAGAGTGACAGGAATGGATGATGGGTTAAACATCAAGGAGCGAATATGCTATTTAAGTTCAATGATGGACATGGGAAGTGATGTTGAAGTTCGTGCAAGTGGGGGTCTTCTTGCCATATTAGAGAATGAAAGGATAATAGATACTCTTGAGCAAAAGGAACATGGAACTTCATCAATTACAATTGATTCTGTCTTAGAAATTTCATTAAATAAGTTTCTTAAACTTGACGCTGCAGCACTAGAAGCATTGCAGATTTTCCAAACAGACAAACATCCGAGCCATATGGGCATTGGCAGAGCCAAAGAAGGGTGGTTCTCAGTGTTTGGGATGATGAATAAGGTTTGTGCTAGTTCATTTCCTAATGATTTAAAATCTCTAAACTGGTTTTTGAGACCAATTCTCGACCTTGACAATTTGAACAGACGTCTCAATGCTATATCATTCTTTTATGCGACGGAAGAATTGATGCTTTCCTTACGGGAGACTCTAAAGTTGGTAAAGGACGTTCCACATATACTCAAGAAATTCAACTCTCCGAGCTTCATGTGTACGCCCAATGATTGGACAGCTTTTGTAAAGAGCATTAGCTCACTCTTATATATGAACAAGATATTTGAAGTAGGCATTTCGGAGAATCTTAGGGAGCTAGCAAAGTACTTAGATTTGGACATAATTGAGAAGGCTAATTCATGCTTTACCTCACAGTTGGCTTATGTATACGAATTGGTAATTGGCGTACTTGATGTTGGCAGAGCAAAAGAGAAGGGATATGAAACACTTGTCAAGGAAGGTTTTTGTGATGAGTTGGATGAACTGAGGCAGATTTATGAGGAATTGCCTGAATTTCTAGCCAAGGTTACATCAATTGAACTTGAGAGATATCCTCAGCTGTATAAAGATAAGCTTGCCCCGAGTATTATATATATACACCAAATAGGATACTTGATGTGCATTTTTGAGGAAAAGCTTGATGATACGACATTGGAGCCGCTAAAAGATTTTGAATTTGCTTTTAGTGATGTTGATGGAGACTTGAGAAGATTTTTTTATCGTACACCAAAGTCACGAGAGTTGGATAATCTGCTTGGAGATATTTATCATAAAATTCTAGACATGGAGAGGGCAATTATTAGAGACTTGGTGTCGCACATACAACTCTTCTCAGTGCATCTTCTGACTGCTGTCAGTTTTGCAGCTGAACTTGATTGCTTTTTGTCATTGGCGCTTGTTGCTCGTCAAAGCAACTATGTAAGGCCTGTTTTGACTGCAGATAACTTGCTTGACATAAAAAATGGAAGACATGTTTTGCAGGAAATGACAGTGGACACTTTTATTCCTAATGACACAAAAATTTTAGATGATGGAAGAGTTAACATCATCACTGGTCCAAATTACTCCGGGAAAAGTGTATACATAAAGCAGGTAGCTTTAATTGTTTTCTTGTCTCACATTGGGAGTTTTGTACCAGCAGATGCTGCAACTGTGGGTTTGACCGACAGAATATTTTGTGCAATGGGGAGCAAGCTTATGACAGCAGAACAGTCAACATTTATGATTGATCTACATCAAGTAGGGATGATGTTAAGACAGGCAACTTCTCAATCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACACTCACTGAAGATGGTATTGGCCTGCTTGGTGGAACCATCAATCACTTTGCTACCTGTAATGAACCTCCAAAGGTGATGGTGTGCACACATTTGACTGAGTTACTTGATGAGAGTTACTTATCAACGTCCGAGACAATCAAATTTTACACCATGAGCATGCTAAGGCCTGACAGCCATGCTACAGAATCTGAAGACATAGTATTTCTGTATCGTTTGGTACCTGGGCACGCTCTTCTTAGCTATGGTGTTCCTGAGGAAGTTATCAGGAGAGCAGCATTTGTCTTGGATGCTATTCAGAACAATAAGCATGTTGAGCGACAATTTAATGAAAAAATCTCTGCTCAAGATAAGCTATATAAGGAATCAGTGGATAAGATGTTGGCGTTTGACGTTTACAATGGGGATCTCACCCTTTTCTTTCAGGATATATTTCCTTCTTAG 2466 39.09 MTDTRTFLAMYITTSQLSVHLVHLKLLLGKFHNRNVACAFNIVGISYYDSSIRQLHVLEVWEDSRTDFPLIDLVKYQAKPLIIYTSTKSEESLLSALQRSDGTSEAPQVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLNIKERICYLSSMMDMGSDVEVRASGGLLAILENERIIDTLEQKEHGTSSITIDSVLEISLNKFLKLDAAALEALQIFQTDKHPSHMGIGRAKEGWFSVFGMMNKVCASSFPNDLKSLNWFLRPILDLDNLNRRLNAISFFYATEELMLSLRETLKLVKDVPHILKKFNSPSFMCTPNDWTAFVKSISSLLYMNKIFEVGISENLRELAKYLDLDIIEKANSCFTSQLAYVYELVIGVLDVGRAKEKGYETLVKEGFCDELDELRQIYEELPEFLAKVTSIELERYPQLYKDKLAPSIIYIHQIGYLMCIFEEKLDDTTLEPLKDFEFAFSDVDGDLRRFFYRTPKSRELDNLLGDIYHKILDMERAIIRDLVSHIQLFSVHLLTAVSFAAELDCFLSLALVARQSNYVRPVLTADNLLDIKNGRHVLQEMTVDTFIPNDTKILDDGRVNIITGPNYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINHFATCNEPPKVMVCTHLTELLDESYLSTSETIKFYTMSMLRPDSHATESEDIVFLYRLVPGHALLSYGVPEEVIRRAAFVLDAIQNNKHVERQFNEKISAQDKLYKESVDKMLAFDVYNGDLTLFFQDIFPS 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27868387 27879999 + BLOR18831 Blo07g00899 63423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00899 821 CDD ABC_MSH5_euk 557 758 - -
Blo07g00899 821 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 40 805 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Blo07g00899 821 ProSitePatterns DNA mismatch repair proteins mutS family signature. 664 680 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo07g00899 821 Gene3D - 202 431 - -
Blo07g00899 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 774 IPR027417 -
Blo07g00899 821 SMART mutATP5 584 771 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo07g00899 821 Pfam MutS domain III 208 537 IPR007696 GO:0005524|GO:0006298|GO:0030983
Blo07g00899 821 SUPERFAMILY DNA repair protein MutS, domain III 205 544 IPR036187 -
Blo07g00899 821 PIRSF MSH2 16 807 IPR011184 GO:0005524|GO:0006298|GO:0030983
Blo07g00899 821 Pfam MutS domain V 588 775 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo07g00899 821 Gene3D - 545 807 IPR027417 -
Blo07g00899 821 PANTHER MUTS PROTEIN HOMOLOG 5 40 805 - -
Blo07g00899 821 SMART DNAend 231 569 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00899 K08741 MSH5; DNA mismatch repair protein MSH5 - vvi:100252044 1240.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00899 Blo-Chr7:27868387 Blo15g00365 Blo-Chr15:4847530 1.68E-07 dispersed
Blo07g00899 Blo-Chr7:27868387 Blo09g00106 Blo-Chr9:1980361 3.09E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g533 . . . . . . Bma10g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1154 . . . . . Blo07g00899 . Bda05g00714 . . Bpe03g00787 . . . . . . . . . Cpe14g00746 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004808 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00899 Blo_Chr07 FPKM 10.080562 10.080608 30.824724 31.785202 13.130745 10.65079 13.635579 26.255062 26.694315 24.56373