Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00901 ATGGTTCAGATCGTGAAGAGGAAGAAGAAGGGAAGGCCATCTAAGGCAGATCTGGCACGCCGGTTGAGCGGCTCTCCGGCTACTGAACCGGTTGTCCGACGAAGTCACCGGTCGAGAAATGTGAGGTACAACATTGACTACGACGACTATCTGGACGACGATTGCGATGACGAGGAAGAGGACGAGGGACTGCAGAAGAAGCTCAAGCTAAAGCTGGTGGTGAAGCTGAACCAGGGCGGGGAAGGGGCTGAGCCGGAGCTAAGCAAATCTCGGACAGAGTTGCGTGGTGCGCACGCGCTGGACGGCGTTGAGTCTCCGTCGGAGGAGGAGGAGGATGAGTCGGAAAGGAAGCCGTTGAAGAAGAGGAGGATTGGCCGTGTTAATGAGGAAGAAGAAGAAGAAGAAGACGACGATGAAAATCGCGCGGACGCGGAGGATGAAGATGAAGATACCCTAGGGGTAAGACGACGAACAAAAGTGGGCTCAAAAGGGTCCGAATCTGTTCCAGGGACTCCACCTGATACTCAATCTGGGATGCCGCTTCCTGATAAGAAAACACTGGAATTGATTCTCGACAAACTTCAGAAGAAAGACATTTATGGTGTGTATGCCGAACCAGTTGATCCAGAAGAGCTTCCTGATTATCACGATGTAATCGCGCATCCAATGGACTTTGCCACGGTGAGGAAGAAATTGGCTAGTGGAGCCTATTCAACTTTGGAACATTTTGCGACTGATGTGTTCCTTATTTGCTCAAATGCAATGCAATATAATGCACCAGAGACCATATACCATAAACAGGCTCATACGATACAAGAGCTTGCCAAGAAGAAATTTGAAAGATTAAGAGTTGATTATGAATCCTCTGAAAAAGAGCTCAAGCTAGAGCAGAAAACAAAATCCAATTGCTTAGTTAAGAAACAGATAAAGAAGCTGCCAGGCCGGATCTCACAGGAACCAATGGGATCAGATTTTTCCTCAGGTGCAACTCTTGCCACTGCTGGAGATGTTCTGAACTGCTCCTATCCGGCCCAAGGTGGTGGTTATGAGAAAAATAGCAATCTTGATGGGCACGTGGAAGGGAATTCTTTATTTGAGAATAATTTGGAGAAAGCTGAAGAATTATTCTCAGGGAAGGGTTTCTCATCAAGATTAGGGAGGAAGGCAGTGCTGCTTGATGAGAACCGTCGAGCTACATATAATATTTCTAAGCAGCCAGAAGTCAGATCAGAATCAATATTAACTACCTTTGAGGGAGAAATGAAGCAACTTGTTGCAGTTGGCCTTCATGCAGAATATTCATATGCCAGGAGCCTGGCTCGCTTTGCAGCAACTCTTGGGCCAGTTGCTTGGAAAGCTGCCTCCAAGAGGATTGAGCAGGCCCTTCCTGCAGGTTGTAAATTTGGCTTAGGTTGGGTTGGAGAATACGAGCCACTTCCAACTCCAGTACTTCTATTTGAGAATCGTAACCAGAAGGAATCTGGTCTATTTCCTCCAGAGTGTTCCACTGCTGAATTGAGAAAGAATGACAAATTGTTAAAGATCCCTTTGCCTACCGAGGAAAATCGTATCAATGTGCCTGTTGCAGAGGTGAAACAATCTTTGTTGGATCCTGCTAGGCGGGATGTTTCAGATGGAAAACCATCATTGTTTGGCTCTGGAGGGATCAAACACAGTTTACCTTTAAATTCTGCGCATCAGCAGCAAAACCTGCAACCCAACAATTTTACCAAGCCAAACAAGATGAAAAATCAGTTTGAATTAAACTTGTTACCTTCCCCCAATCTGAATCATGCTGATCCTGTCCCAGAAAAGCAATGTAATTCACAATCTATTGCTTCCAGGTCCAAAGACTTGGCCCCTGTTAAAATGAGTCTTCTACCTTCTGGATCTTTTAAACTGCCAGATTCTAATGGAGTTGTCGCTGGAGGACTACCCAACGGAAAAGTTGTGACAGATTGCTTAAATAGTCATCCTGTTATTGTTTCTTCTGATAGTCTTCCTCATCAAATGGTAAGAGCGGTAGCATACTCCTCCCATGGACAAGAACAGCGCCTCACTGACCCAGTTCAGTTAATGAAATCGTTGAGTGAAAAGGCTCAAAGGCAACAGAAATACATCAATCAAGCTCCGATTGACGCTCCACCAGTCATGACAGTGGAGTCCAATTCCATAAGGAAAACTGAATCCAACAATGCTTCCATGGCAGCTGCCCGCGCATGGATGTCTGTTGGAGCTGGAGGTTTTAAAAAAATTGCAGAAAATTCTAGCCTGCCAAATAATCACATATCAGCAGACTCGTTATACAACCCAGCGAGGGACTTCAATCCACAAATCAGAGTTCATGGGGAGCCTCCTTGTGCTGGGGGGAACAAATTTCATTCTGAGAAGAACGGAAACCCCTTGCAGGCATGTTTACCTCAGTCTGTTCGTAAGGGTACCGAAGCACAGCTCCAAAGCCAACCTATAGTTTTTCCCCAGTTAGCTCAAGCCGACTTGTCTAGGTTTCAAGTGCATCCCCATTGGCAAGGTCTTGGTCCGCTTGCCCAGCCAAGGCAGAAGCAAGAAATGCTTCCCCCAGACTTGAACATTGGTTTCCAGAGTCCAAGTTCTCCAGTGAGACAATCCTCTGGCGTCCAAGTGGACTCACAGCAGCCCGACCTGGCCTTGCAACTTTGA 2679 46.44 MVQIVKRKKKGRPSKADLARRLSGSPATEPVVRRSHRSRNVRYNIDYDDYLDDDCDDEEEDEGLQKKLKLKLVVKLNQGGEGAEPELSKSRTELRGAHALDGVESPSEEEEDESERKPLKKRRIGRVNEEEEEEEDDDENRADAEDEDEDTLGVRRRTKVGSKGSESVPGTPPDTQSGMPLPDKKTLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIAHPMDFATVRKKLASGAYSTLEHFATDVFLICSNAMQYNAPETIYHKQAHTIQELAKKKFERLRVDYESSEKELKLEQKTKSNCLVKKQIKKLPGRISQEPMGSDFSSGATLATAGDVLNCSYPAQGGGYEKNSNLDGHVEGNSLFENNLEKAEELFSGKGFSSRLGRKAVLLDENRRATYNISKQPEVRSESILTTFEGEMKQLVAVGLHAEYSYARSLARFAATLGPVAWKAASKRIEQALPAGCKFGLGWVGEYEPLPTPVLLFENRNQKESGLFPPECSTAELRKNDKLLKIPLPTEENRINVPVAEVKQSLLDPARRDVSDGKPSLFGSGGIKHSLPLNSAHQQQNLQPNNFTKPNKMKNQFELNLLPSPNLNHADPVPEKQCNSQSIASRSKDLAPVKMSLLPSGSFKLPDSNGVVAGGLPNGKVVTDCLNSHPVIVSSDSLPHQMVRAVAYSSHGQEQRLTDPVQLMKSLSEKAQRQQKYINQAPIDAPPVMTVESNSIRKTESNNASMAAARAWMSVGAGGFKKIAENSSLPNNHISADSLYNPARDFNPQIRVHGEPPCAGGNKFHSEKNGNPLQACLPQSVRKGTEAQLQSQPIVFPQLAQADLSRFQVHPHWQGLGPLAQPRQKQEMLPPDLNIGFQSPSSPVRQSSGVQVDSQQPDLALQL 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27906524 27911276 + BLOR18833 Blo07g00901 63425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00901 892 Coils Coil 127 148 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 864 892 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 130 147 - -
Blo07g00901 892 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 892 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 1 15 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 45 64 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 86 104 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 148 162 - -
Blo07g00901 892 Gene3D - 182 303 IPR036427 GO:0005515
Blo07g00901 892 Pfam Bromodomain 189 269 IPR001487 GO:0005515
Blo07g00901 892 CDD Bromodomain 183 279 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 76 182 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 112 129 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 540 615 - -
Blo07g00901 892 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 892 - -
Blo07g00901 892 MobiDBLite consensus disorder prediction 860 892 - -
Blo07g00901 892 PRINTS Bromodomain signature 212 228 IPR001487 GO:0005515
Blo07g00901 892 PRINTS Bromodomain signature 228 246 IPR001487 GO:0005515
Blo07g00901 892 PRINTS Bromodomain signature 246 265 IPR001487 GO:0005515
Blo07g00901 892 ProSitePatterns Bromodomain signature. 201 257 IPR018359 -
Blo07g00901 892 ProSiteProfiles Bromodomain profile. 195 265 IPR001487 GO:0005515
Blo07g00901 892 MobiDBLite consensus disorder prediction 560 592 - -
Blo07g00901 892 Coils Coil 272 299 - -
Blo07g00901 892 SUPERFAMILY Bromodomain 167 283 IPR036427 GO:0005515
Blo07g00901 892 MobiDBLite consensus disorder prediction 1 39 - -
Blo07g00901 892 SMART bromo_6 176 284 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00901 K22184 BRD9; bromodomain-containing protein 9 - qsu:112014188 943.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00901 Blo-Chr7:27906524 Blo13g00473 Blo-Chr13:25617984 1.16E-87 dispersed
Blo07g00901 Blo-Chr7:27906524 Blo04g00606 Blo-Chr4:5238852 1.55E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00901 Blo_Chr07 FPKM 10.909259 9.676773 15.030691 15.832487 14.329922 16.799728 16.698109 18.820002 18.154942 18.717869