Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00917 ATGCCGAAGCCTCATCCTTGCCTCATCCAGAAACGCACTGAATCGAGCAATCCTGGGATTTTTCAGACGACTACCTTCAGCCGTGCCTCGACTGCGTGTAGTCCGAAAAGTCCTAGTGCAAAGTACTTCAATTTCGAGAGTGAGGAGTGGAAACTCGCTGTAACTGGTTGGAAACAGACCAATGCACCTACTGCCGATCGAGACTTCTTCTCCTCTTCTTCACTGTCTTCTTCGCGGCGAGAGAGAAAGGGCTTCGCGACGAAGCTGGGCACCGACGGTCTCCCTCATTCTTCTCCAGACGAAGACCTCCAGTCCTCTGGCTCCAGACGATCACCAGTGGAGTTCTCCAAGCTCGGTAGGCTCGACGAGTCAGACTTTTCCAAGCTCGACAGGCTTGGCTCGTTATCCACCTCTATTGGGGACCGCCAAGCTAGCTGGAAAATTCCTAGGGATTTGACTGAGGCGTCGTTATCGGGGGCAGGATTATCCATTGTATCAGCTCTGTGCATGACATTTTTATTTGGAATGGAATTAAATAATTATTTAACCACAAGCACCTCTACATCCCTTATTGTTGACAAGAGCAGCGACGGGGATTTCTTACGCATTGACTTTAATATCAGTTTTCCTGCACTCTCGTGTGAATTTGCGACAATTGATGTGAGTGATGTGTTGGGAACAAATAGGTTAAATATTACAAAAACAATCCGAAAGTTTCCCATCGATCCAAACCTAAGGCCCACAGGCTCTGAGTTCCACTCTGGACCAATTTTGCACGCTATTAAGCATGGAGATGATGTTGACGAAGAGCATGGGGAAGGTTCTGTATCATTGTCGGGAGATAATTTTGATAAATATTCTCACCTGTTTCATATTTTGGTTGTCAATTTTTATGCTCCTTGGTGCCCTTGGAGTAAACGCATGAAACTTTCTTGGGAGAAGGCAGCCAAAACAATTAGAGAGAGATATGATCCAGAGTTAGATGGTCGTATTCTTTTGGGGAAGGTAGATTGCACGATAGAAGGAGAATTGTGTAGGAGGCATCACATTCAAGGGTATCCATCTGTTCGCATATTTCGTAAAGGAAGCGATCTTAGGAGTAACCATGGTCACCATGAACATGAATCTTACTACGGAGATCGAGATACAGAAAGCCTGGTTAAGGCTATGGAAGAATTGGTTGCACCCATTCCAATTGAGTCACATGCACTGTCTTCGGAAGATAAATCGAAAAACACAACAGAAAATTTGACTAGGCCTGCACCGATTTCAGGCGGGTGTAGAGTCGAAGGATATGTCCGCGTAAAGAAAGTTCCTGGAAGTCTTATTGTTGCCCCTCGATCAGGATCCCATTCGTTCGATGCATCTCAAATTAATATGTCTCATGTCGTCTCCCATCTTTCATTTGGCCGAATGATTACAGCAAAAACATTGAGTGATGTTAAACAGTTGGTGCCTTACATTGGTAAAAACCATGAAAGACTCAATGGTCGCTCATTCATCAATCATCGAAACTTAGGTGAAAATGTTACTATAGAGCATTATCTTCAAGTAGTCAAAACAGAGGTGATGACAACACGATCCGGTAAAGTTCTCGAGGAGTATGAATACACGTCCCATAGCAGTTTGACCCAGAGTTTGCATGTGCCGGTTGCCAAATTCCATTTTGAGCTTTCGCCTTTGCAGGTTGTGATAACGGAAAATCAGAAGTCGTTTTCGCATTTTATAACGAACGTTTGTGCGATAATTGGAGGTGTTTTTACGGTTGCAGGAATATTGGATTCAATTCTGCACAACACTATAAGAATCATGAGAAAGGTAGGAAAGACCTTAAGTGTGAGGAAATGGCATGCAGCATTTACTCCAGAAGGATATCTTGATATACGAAAAACTCTAAGCCGGATCCATCGTGGGGGGATTCATCCTTCTATCAGAGGACAAGTCTGGGAATTTCTTCTTGGCTGTTATGATCCCCATAGCACATTTGATGAAAGAGAGCAGATGCGGCAGAGGCGAAGGTTGCAGCAATATGCTAGGTGGAAGGAAGATTGCCGCCAAATGTTCCCTGTTGTTGGAAGTGGTAGGTACATCACAGCGCCTGTAATAACAGAAGACGGCCATCCCATTCAGGATCCGTTAGTGCTTAAGGAGACAAATTTAGCTTTACCATCTGAAAATGATGCCCGGGCCAATGCTAATCTTATGGGTGGTTCACTGTCAAAAGCTTCTAATGGTTTGAAGATTGTAAAAGACAAAAAGGTCATTCAATGGATGCTTACTCTACATCAAATAGGTCTTGATGTGGTTCGGACCGACAGAACATTGATGTTTTATGAGAAGCAGGAGCATTTGTCCAAGCTTTGGGATATTCTATCTGTATATGCCTGGATTGATAAAGATGTAGGTTATTGTCAAGCAGGAATGAGTGATCTTTGTTCCCCAATGATTATTCTTCTTGAAGACGAGGCTGATGCATTTTGGTGCTTTGAACGCCTGATGAGACGATTGCGAGGAAATTTCAGATGCACTGATAGTTCCGTCGGCGTGGAGGCACAGCTTAGTAATTTGGCTGAAATTACTCAAGTTATTGACCCAAAGCTTCATCAACACTTGGAGGCTCTTGGCGGAGGTGACTATTTATTTGCTTTTCGGATGCTCATGGTTATGTTTCGTCGAGAATTTTCTTTTTGCGACTCCCTATATCTTTGGGAGATGATGTGGGCCCTGGAATATGATCCGGACCTGTTCTCGATGTATGAAGATCCAGATTTGGCAAGCGAAAAAGCAGAAGGATCGAAAGGAAGAGCGAGGTCGATGCGACAGTACGGCAAGTACGAGAGAGATAATCTCAAGGCCAATAGTTCAGAAGCTCCCCTCCCCATCTCCATTTTTCTAGTTGCAAGTGTCTTGAAAGATAAAAGCTCTAAGCTACTTCACGAGGCTCGGGGCTTGGACGATGTCGTCAAGATATTGAATGACATCACTGGAAATCTAGACGCCAAAAAAGCTTGCAATGGAGCAATGAAACTTCACAGGAAATATCTTAAGAAGGTAAATTGCTTTGATTCTGGAAAATTCTGTTCATCCAGAACTCACCTTCGTGTGTTATTGCGACAACAGGCTAAAAAGACATGA 3135 43.8 MPKPHPCLIQKRTESSNPGIFQTTTFSRASTACSPKSPSAKYFNFESEEWKLAVTGWKQTNAPTADRDFFSSSSLSSSRRERKGFATKLGTDGLPHSSPDEDLQSSGSRRSPVEFSKLGRLDESDFSKLDRLGSLSTSIGDRQASWKIPRDLTEASLSGAGLSIVSALCMTFLFGMELNNYLTTSTSTSLIVDKSSDGDFLRIDFNISFPALSCEFATIDVSDVLGTNRLNITKTIRKFPIDPNLRPTGSEFHSGPILHAIKHGDDVDEEHGEGSVSLSGDNFDKYSHLFHILVVNFYAPWCPWSKRMKLSWEKAAKTIRERYDPELDGRILLGKVDCTIEGELCRRHHIQGYPSVRIFRKGSDLRSNHGHHEHESYYGDRDTESLVKAMEELVAPIPIESHALSSEDKSKNTTENLTRPAPISGGCRVEGYVRVKKVPGSLIVAPRSGSHSFDASQINMSHVVSHLSFGRMITAKTLSDVKQLVPYIGKNHERLNGRSFINHRNLGENVTIEHYLQVVKTEVMTTRSGKVLEEYEYTSHSSLTQSLHVPVAKFHFELSPLQVVITENQKSFSHFITNVCAIIGGVFTVAGILDSILHNTIRIMRKVGKTLSVRKWHAAFTPEGYLDIRKTLSRIHRGGIHPSIRGQVWEFLLGCYDPHSTFDEREQMRQRRRLQQYARWKEDCRQMFPVVGSGRYITAPVITEDGHPIQDPLVLKETNLALPSENDARANANLMGGSLSKASNGLKIVKDKKVIQWMLTLHQIGLDVVRTDRTLMFYEKQEHLSKLWDILSVYAWIDKDVGYCQAGMSDLCSPMIILLEDEADAFWCFERLMRRLRGNFRCTDSSVGVEAQLSNLAEITQVIDPKLHQHLEALGGGDYLFAFRMLMVMFRREFSFCDSLYLWEMMWALEYDPDLFSMYEDPDLASEKAEGSKGRARSMRQYGKYERDNLKANSSEAPLPISIFLVASVLKDKSSKLLHEARGLDDVVKILNDITGNLDAKKACNGAMKLHRKYLKKVNCFDSGKFCSSRTHLRVLLRQQAKKT 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28161602 28182761 + BLOR18849 Blo07g00917 63441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00917 1044 Pfam Endoplasmic reticulum vesicle transporter 423 594 IPR012936 -
Blo07g00917 1044 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 147 229 IPR039542 -
Blo07g00917 1044 Pfam Thioredoxin 277 375 IPR013766 -
Blo07g00917 1044 Pfam Rab-GTPase-TBC domain 755 908 IPR000195 -
Blo07g00917 1044 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 848 1014 IPR035969 -
Blo07g00917 1044 MobiDBLite consensus disorder prediction 401 421 - -
Blo07g00917 1044 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 746 840 - -
Blo07g00917 1044 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 146 607 IPR045888 -
Blo07g00917 1044 ProSiteProfiles Thioredoxin domain profile. 230 395 IPR013766 -
Blo07g00917 1044 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 146 607 - -
Blo07g00917 1044 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 614 870 IPR035969 -
Blo07g00917 1044 Gene3D - 846 1025 - -
Blo07g00917 1044 ProSiteProfiles TBC/rab GAP domain profile. 639 910 IPR000195 -
Blo07g00917 1044 CDD PDI_a_family 276 390 - -
Blo07g00917 1044 MobiDBLite consensus disorder prediction 1 21 - -
Blo07g00917 1044 Gene3D Glutaredoxin 268 420 - -
Blo07g00917 1044 MobiDBLite consensus disorder prediction 98 112 - -
Blo07g00917 1044 SMART tbc_4 636 933 IPR000195 -
Blo07g00917 1044 MobiDBLite consensus disorder prediction 87 114 - -
Blo07g00917 1044 SUPERFAMILY Thioredoxin-like 274 393 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00917 - - - zju:107432289 753.821
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00917 Blo10g00815 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00278 Blo-Chr5:3044384 Blo07g00917 Blo-Chr7:28161602 4.12E-143 dispersed
Blo07g00917 Blo-Chr7:28161602 Blo10g00815 Blo-Chr10:25865528 0 dispersed
Blo11g00382 Blo-Chr11:3272971 Blo07g00917 Blo-Chr7:28161602 6.91E-09 dispersed
Blo18g00137 Blo-Chr18:1277573 Blo07g00917 Blo-Chr7:28161602 3.16E-12 dispersed
Blo02g00451 Blo-Chr2:6279069 Blo07g00917 Blo-Chr7:28161602 2.82E-09 transposed
Blo10g00794 Blo-Chr10:25305380 Blo07g00917 Blo-Chr7:28161602 4.86E-61 transposed
Blo10g00812 Blo-Chr10:25515377 Blo07g00917 Blo-Chr7:28161602 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g461 . . . . Bpe09g00185 . Bma10g00538 Bma13g01037 . . . Cma09g00934 . Car09g00847 Sed07g2660 Cpe06g00751 . Bhi09g01932 Tan01g4519 Cmetu04g0238 . Hepe01g1301 Mch11g1163 . . . . . . . . . . Cone14ag1127 Cone15ag1146 Lsi04g01231 . . . Blo07g00917 Blo10g00815 Bda05g00731 Bda12g00898 . Bpe03g00800 . . . . Cmo09g00931 . . . . . . . . . . . . . Cla05g01521 Cam05g1634 Cec05g1637 Cco05g1670 Clacu05g1623 Cmu05g1521 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005210 2 1 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00917 Blo_Chr07 FPKM 22.927866 26.234312 10.979531 11.776461 3.850457 3.885782 3.563169 3.776007 3.692187 3.448148
Blo07g00917 Blo_Chr07 FPKM 23.168184 25.79722 11.686616 12.112073 3.332664 3.325361 3.532432 3.495573 3.425258 3.012893