Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00921 ATGCCCGCTCAGCTTCTTATTTCTGAAAACTACGGAAAATCACAGAACCATCGGCGCTATGCCGACTTTCCTCAGACCGTCTGGGGAAATCATTTCAGTTCTTTCAATTCCGAGTCCTTGAAATTAGAGCAGAAAATTGAAGACGAAATTCAAAACCTGAAAGAAGACTTGAAGAACGTGTTGACTGCTCCTACCGAAAAGTCCTCACAGAAACTAAACTTGATCGACTCAATCCAACGATTAGGAGTTGCAGATCACTTCCAATCAGAAATCCAAGACTTGTTGGACCAAGTTAACAAGACTTATGTTGACTCTTTCCCTAACAAAAATGATCATAATCTTTTGTCAGATGCTCTTCTCTTCCGATTACTCAGACAACAGGGTTACAAAGCTTCGACGGATATATTCAAGAAGTACATAGACAGTGATGGAAAATTCAAGGAAAGCTTAGCTGATGATGTGAGAGGACTATTGAGTTTGTATGAAGCAGCATATTTTAGTGTTCATGGAGAAGATATACTCGATGAAGCACTTAACTTTGCCACAAAAAACTTGGAAGCCATTGTAGGTAATTTAAGCTTCCCTCTTTCTGAAGAAGTAAATTATGCTCTAAAGCATCCTCTCCGACGAGGCATGCCAAGGCTTGAAGCAAGGCACTTCATGTCGATTTACAAGGAAGATCCCTCTCGCAGTGACGTCCTTCTTACTTTTGCAAAACTCGATTATAACATATATCAAAAACTTCACCAGGAGGAACTTAAAGAAATCTCTAGATGGTGGAAGGATTTAGACTTTCCAAGCAAGCTACCCTTTGCCAGAGATAGGATTGTTGAATGTTACTTTTGGGCGTTGATTATAAGCCCCGAGCCTCAATACTCAGTTCTTAGAAGGTTCTTGGCCAAAGTAATTCAAATGGCATCGATTCTCGATGATATATACGACGTTCATGGCACACCCGAAGAAATTCGACTTCTGACTGACGCAATTGATAGGTGGGATATTGGCGCCCAAGATCAACTTCCTGACTACCTTAAATTTTACTACCAGAAAGTGTTGTGTCTTTATGCCGATTTCGAAAGAGAGAATGGTATCAAGAGTGAATCATTCCGAATGCTCCGAGCAAAAGATGGGATGAAAGGGCAAGCAAAGGCCTACTTTGGTGAAGCAAATTGGTTCCATGCAGGCCATATACCCACCATTGATGGGTATTATGAGTTTGCTTTGCCTTCCACTTGCTATCGTTTTTTTTCGGTCACTGTCTTTCTTGGCATGGGAGATATCATTCCAGATGAGGCTTTTGATTGGATATTTACAAAACCCAAAATTCTTAGTGCGACTGAAATCATCGGAAGGCTCATGAACGACATCGTCTCCCACAAGTTTGAGCAAGTTCGGGGCCACACAGCATCTGCCATGGAATGTTACATCAAACAATATGGAGTTTCAGAGGAGGAGGCCCGCATTGCCTTAGAGAAGCGAGTAGATGATGCGTGGAAGGATATAAATGAGTTTTGTCTGAAACCTACTAAGTTCCCGATGACCGTGTTGTCGCCCATTGTTAATCTCGCTAGGGCAAGCCATGTCAACTATATTGATGAAGATGGATACACGATCATAGACGGAGAAACTAAACGTTACATTACTTCTCTGGTTGTACACCCTGTACCACTTTGA 1674 41.7 MPAQLLISENYGKSQNHRRYADFPQTVWGNHFSSFNSESLKLEQKIEDEIQNLKEDLKNVLTAPTEKSSQKLNLIDSIQRLGVADHFQSEIQDLLDQVNKTYVDSFPNKNDHNLLSDALLFRLLRQQGYKASTDIFKKYIDSDGKFKESLADDVRGLLSLYEAAYFSVHGEDILDEALNFATKNLEAIVGNLSFPLSEEVNYALKHPLRRGMPRLEARHFMSIYKEDPSRSDVLLTFAKLDYNIYQKLHQEELKEISRWWKDLDFPSKLPFARDRIVECYFWALIISPEPQYSVLRRFLAKVIQMASILDDIYDVHGTPEEIRLLTDAIDRWDIGAQDQLPDYLKFYYQKVLCLYADFERENGIKSESFRMLRAKDGMKGQAKAYFGEANWFHAGHIPTIDGYYEFALPSTCYRFFSVTVFLGMGDIIPDEAFDWIFTKPKILSATEIIGRLMNDIVSHKFEQVRGHTASAMECYIKQYGVSEEEARIALEKRVDDAWKDINEFCLKPTKFPMTVLSPIVNLARASHVNYIDEDGYTIIDGETKRYITSLVVHPVPL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28237792 28240103 - BLOR18853 Blo07g00921 63445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00921 557 Gene3D - 66 230 IPR036965 GO:0010333|GO:0016829
Blo07g00921 557 Pfam Terpene synthase family, metal binding domain 235 500 IPR005630 GO:0000287|GO:0010333|GO:0016829
Blo07g00921 557 CDD Terpene_cyclase_plant_C1 18 554 IPR044814 GO:0010333|GO:0016102
Blo07g00921 557 Gene3D Farnesyl Diphosphate Synthase 26 545 IPR008949 -
Blo07g00921 557 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 26 229 IPR008930 -
Blo07g00921 557 Coils Coil 36 63 - -
Blo07g00921 557 SFLD Terpene Cyclase Like 1 C Terminal Domain 233 555 IPR034741 -
Blo07g00921 557 SFLD Isoprenoid Synthase Type I 233 555 - -
Blo07g00921 557 SUPERFAMILY Terpenoid synthases 232 555 IPR008949 -
Blo07g00921 557 Pfam Terpene synthase, N-terminal domain 28 204 IPR001906 GO:0010333|GO:0016829
Blo07g00921 557 PANTHER OS04G0344100 PROTEIN-RELATED 3 539 - -
Blo07g00921 557 PANTHER TERPENE SYNTHASE 2-RELATED 3 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00921 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - jre:109018572 590.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00921 Blo-Chr7:28237792 Blo10g00708 Blo-Chr10:22642275 0 dispersed
Blo10g00709 Blo-Chr10:22661167 Blo07g00921 Blo-Chr7:28237792 3.80E-51 dispersed
Blo03g01475 Blo-Chr3:41494206 Blo07g00921 Blo-Chr7:28237792 2.17E-33 transposed
Blo10g00772 Blo-Chr10:24018971 Blo07g00921 Blo-Chr7:28237792 0 transposed
Blo10g00793 Blo-Chr10:25269922 Blo07g00921 Blo-Chr7:28237792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00921 . . Bda12g00870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01688 .
Vvi19g403 . . Bda07g00331 . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0113 . . . . . . Blo07g00921 . Bda05g00743 . . Bpe03g00808 . . . . . . Cma16g00830 . . . . . . . . . . . . . . . . . . Lsi05g00657 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00921 Blo_Chr07 FPKM 28.094728 31.133698 30.336311 32.397213 13.940397 12.960439 14.964034 27.262636 25.438398 28.475174