Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00931 ATGGAATCTGGAGTAGGAAATTGTAAGCGTTCAGACCAGGGACAGTTAGTTCTTCGGATAGAATCTTGTGAAATATGGTACTATTCCATGTATGGACATGTTGAAAGACTTGCTGAAGAAATAAAGAAGGGGGCAGCATCTGTTGAAGGTGTTGAAGCCAAATTATGGCAGGTTCCAGAGACATTGCCGGAGGAGGTTCTTATCAAAATGAGTGCGCCACCCAAGAGTGATGTACCAGTCATCACTCCTAATGAACTTCCGGAAGCTGATGGGTTTATTTTCGGCTTTCCAACAAGATTTGGAATGATGGCTGCTCAATTCAAAGCCTTTTTGGATGCAACTGGGGGTCTGTGGAGAACACAACAACTTGCAGGCAAGCCAGCCGGGATCTTCTACAGCACTGGGTCCCAGGGTGGTGGACAGGAGACCACACCATTGACTGCCATAACTCAACTGGTTCACCATGGAATGCTATTTGTTCCGATTGGGTACACATTCGGAGCAGGAATGTTCGAAATGGAAAGTGTCAAAGGCGGAAGCCCTTACGGGGCGGGTACTTATGCGGGTGATGGGTCTAGACAACCATCTGAGCTGGAGTTGGAGCAAGCATTTCACCAAGGCAAGTACATTGCTACTATCGCCAAGAAGCTCAAGGGAGGAGCTTAA 666 47.45 MESGVGNCKRSDQGQLVLRIESCEIWYYSMYGHVERLAEEIKKGAASVEGVEAKLWQVPETLPEEVLIKMSAPPKSDVPVITPNELPEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMLFVPIGYTFGAGMFEMESVKGGSPYGAGTYAGDGSRQPSELELEQAFHQGKYIATIAKKLKGGA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28487874 28489691 - BLOR18863 Blo07g00931 63455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00931 221 Gene3D - 22 219 IPR029039 -
Blo07g00931 221 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 16 221 - -
Blo07g00931 221 SUPERFAMILY Flavoproteins 27 218 IPR029039 -
Blo07g00931 221 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 16 221 - -
Blo07g00931 221 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 25 217 IPR010089 GO:0003955|GO:0010181
Blo07g00931 221 ProSiteProfiles Flavodoxin-like domain profile. 23 210 IPR008254 GO:0010181
Blo07g00931 221 Pfam NADPH-dependent FMN reductase 35 162 IPR005025 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00931 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - jre:109014187 372.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00931 Blo10g00789 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00931 Blo-Chr7:28487874 Blo14g00346 Blo-Chr14:3762940 1.12E-101 dispersed
Blo05g00784 Blo-Chr5:28753526 Blo07g00931 Blo-Chr7:28487874 5.09E-94 transposed
Blo15g00688 Blo-Chr15:21317889 Blo07g00931 Blo-Chr7:28487874 1.12E-85 transposed
Blo14g00087 Blo-Chr14:642809 Blo07g00931 Blo-Chr7:28487874 1.93E-93 transposed
Blo10g00789 Blo-Chr10:24669237 Blo07g00931 Blo-Chr7:28487874 3.59E-136 wgd
Blo07g00931 Blo-Chr7:28487874 Blo08g00174 Blo-Chr8:1962405 3.43E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00931 Blo_Chr07 FPKM 6.819212 7.88413 2.262725 2.242347 1.987793 2.446995 2.161212 1.610917 1.826985 2.236153