Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00952 ATGGATGATACAAACCCATCTCTGGTCGAAGTTAGTCAGGCAGAAGATGACGAAGAACATGGCGAAGAAGAAGTGGAAGAAGAAAACAGTTCGAAATGGTGGAAAACCCATATTTTGGATACAAATGAGGCTAAGACCCAAATCTTGTTTTCGCTTCCCATGATTCTGACAAATGTGTTTTACTATATGATTACTCTGGTCTCCGTCATGTTCGCCGGACATCTCGGCGAGCTTGAACTCGCCGGAGCTACTCTTGCTAATTCTTGGTCCACTGTCACTGGCTTTGCTTTCATGATAGGTTCGAGTGGAGCTCTCGAAACACTCTGTGGACAAGCATTTGGTGCAAAATGTTACAGAAATCTCGGGTTATATCTTCAAGCCTCTTGTCTCATATCCTTCTTTTTCTCTATCCTCATTTCCATTTTCTGGTGGTTCACTGAGCCCGTGCTGATTTTACTCCATCAAGAACCGGATATTGCTAAGAAAGCCGGCATATACATGAAGTTTTTGATTCCGGGCTTGTTAGCTTACGGATTCTTACAAAACATCGTAAGATTTCTTCAGACACAATCCGAGGTTGTGCCACTGCTTATCTTCTCGGCTCTTCCATTGGCGGTTCATATCCCCATTGCATATTTGTTTGTTAATGTTTCTTCTATGGGATTCGAGGGAGCTTCAATGGCTGCTTCTGTTACGATGTGGATTGCGTTTCTGGTTCTGGCCATTTATACACTTAAATCGAAGAAGTTTGAGAATACTTGGGATGGATTTTCGATGGAATCGTTTGGTTACATTTTCACAAACCTCAAACTTGCTATTCCGTCTGCAGCCATGGTTTGTTTGGAGTACTGGGCCTTCGAGATTCTCGTGCTCTTAGCTGGATTGATGCCAAACCCGGAAACAACTACGTCGCTAATTGCAATGTGTGTAAACACTGAAGCCATTGCTTTCATGAGCGCCTTCGGCCTCAGTGCTGCTGCAAGCACGAGGGTGTCGAATGAGCTGGGAGCAGGCAATCGCAAGCAAGCGAAGGCGGCCATGGCAGTCACTCTCAAGCTCTCCCTCCTCCTCGTGTTTGTCATTGTTCTAGCACTTGGCTTTGGTCATAACATCTGGGCCTCCCTCTTCAGTGATAGCCATGTCATAATCAAAGCTTTCGCTTCCATTACACCGTTTCTTGTTATCTCGATAATATTTGATTCAATTCAAGGCATCTTATCAGGGGCGGCCAGAGGTTGCGGGTGGCAACACTTTGTTGTGTACATAAACTTGGCGACATTTTATTTCATTGGGATGACAGTTGCGGCTGTGCTCGGATTCAAGTTTAAACTGCATGCTAAGGGTTTGTGGATAGGCTTAATTACGGGTCTCCTGTGTCAAACTATCTCGCTCGTGGTCCTTATGTGGCGCGGGAAATGGAAGAAGTTCGTTTTGTTTGAGAACGGCGACGATGAGGAAACACGAAAGCCACTTGTTGTTGTGTGA 1485 45.12 MDDTNPSLVEVSQAEDDEEHGEEEVEEENSSKWWKTHILDTNEAKTQILFSLPMILTNVFYYMITLVSVMFAGHLGELELAGATLANSWSTVTGFAFMIGSSGALETLCGQAFGAKCYRNLGLYLQASCLISFFFSILISIFWWFTEPVLILLHQEPDIAKKAGIYMKFLIPGLLAYGFLQNIVRFLQTQSEVVPLLIFSALPLAVHIPIAYLFVNVSSMGFEGASMAASVTMWIAFLVLAIYTLKSKKFENTWDGFSMESFGYIFTNLKLAIPSAAMVCLEYWAFEILVLLAGLMPNPETTTSLIAMCVNTEAIAFMSAFGLSAAASTRVSNELGAGNRKQAKAAMAVTLKLSLLLVFVIVLALGFGHNIWASLFSDSHVIIKAFASITPFLVISIIFDSIQGILSGAARGCGWQHFVVYINLATFYFIGMTVAAVLGFKFKLHAKGLWIGLITGLLCQTISLVVLMWRGKWKKFVLFENGDDEETRKPLVVV 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28808369 28811220 - BLOR18884 Blo07g00952 63476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00952 494 CDD MATE_eukaryotic 43 475 IPR045069 GO:0042910|GO:1990961
Blo07g00952 494 Pfam MatE 53 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo07g00952 494 Pfam MatE 274 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo07g00952 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 473 - -
Blo07g00952 494 TIGRFAM matE: MATE efflux family protein 53 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo07g00952 494 PANTHER PROTEIN DETOXIFICATION 24 473 - -
Blo07g00952 494 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00952 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - qsu:111992976 638.262
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00952 Blo10g00756 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00952 Blo-Chr7:28808369 Blo10g00758 Blo-Chr10:23779979 1.20E-153 dispersed
Blo11g00756 Blo-Chr11:10289536 Blo07g00952 Blo-Chr7:28808369 1.67E-114 transposed
Blo12g00823 Blo-Chr12:26575869 Blo07g00952 Blo-Chr7:28808369 1.33E-94 transposed
Blo15g00062 Blo-Chr15:496856 Blo07g00952 Blo-Chr7:28808369 4.20E-121 transposed
Blo17g00432 Blo-Chr17:5279622 Blo07g00952 Blo-Chr7:28808369 3.00E-105 transposed
Blo10g00756 Blo-Chr10:23756077 Blo07g00952 Blo-Chr7:28808369 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00952 Blo_Chr07 FPKM 1.617368 0.610875 0.0 0.473488 17.003407 24.642422 20.364101 1.697835 0.0 0.0