Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00965 ATGCCGGATCCGAAGACAGTTTTATCATTTGCAGTCTCCGTTGCCGCTTCTGCTGTACTGGTGCGGAGCATCATCAACGATATAGTACCGGAAGAGACGAAAACGTACTTGTATTCCGGAATCAACTACGTCTTTCGTCAATTCTCGTCGCAGCTCACCATCGTCATCGACGAATTTCAGGGACTCTTCACCAACCTGGTTTTTGAAGCTGCGAATGACTACTTAGGCACAATTGCTTCTCCGAATGCTCAGAGACTGAAAGTCAGCAAAGCCGAGAATGACAAGAGTCTGATAATCAGCATCGATCGGGATGAAGACGTCGTTGATGTTTACGATGACTTCAACATTACTTGGAGGTTGATTTCCACCACAATCGAAAATTCCGGCCAGAGGAATCCAAGTGACCTAAATGCGGCTCTGAAATCTGAGGTTAGATCTTACGAGTTGACATTTCACAAGAAACACAGAGAGAGAATTCTGAATTCTTACATTCCGTATATTATGGAGAGAGCTAGGGTCATTAAAGAAGAAAATAAGACGATTCAGCTCCATACGGTTGATTATAGGTCATGGGACTCAGATACTGCAAATCTCAAACATCCTATGACCTTCAAGACTCTAGCCATCGACGAAGAGCTCAAAAAATCGATAATAGAGGATTTGGACAACTTTGTAAAGGGAAAAGAGTTCTATAGAAAGATCGGAAGAGCTTGGAAACGAGGATACCTTTTGTACGGACCTCCGGGTACAGGAAAGTCAAGCTTGATTGCATCCATGGCTAATCACCTGAACTTCGACGTCTACGATCTGGATTTAACAGAAATTGATAGAAACTCTGACTTGAAAGTATTGTTGCTTGGCATGTCTAATCGTTCGATTCTCATAATTGAGGACATTGATTGCTCTGTCAAACTGAAGAATCGAGAATCGGAAGAGGAGGAAGACAAATCTTCGCAAAATAAGGTAATCAGCCCTGAAATTCGAACAGTTATTTTAAATGAAATGAGTGACTTCCTCCAATTAATCTTCTATCCTTGTTATGAAACTCAGCGTCTCTTGAGTGAACCAGCGCCAGGGATTAGTGCCTCCCCTTCAGAAGATAATATGCGGTACTTTAATGTGATGATACTAGGCCCAACCCAGTCCCCCTACGAAGGTGGGGTTTTCAAGCTGGAACTATTTTTGCCTGAAGAATATCCTATGGCTGCTCCCAAGGTCCGATTTCTCACCAAAATATATCATCCCAACATTGACAAGCTTGGGAGGATATGCCTTGATATTCTGAAGGACAAATGGAGTCCCGCTCTCCAAATAAGAACTGTGCTTTTGAGTATACAAGCTTTGCTGAGTGCTCCAAATCCTGACGACCCACTTTCTGAGAACATTGCGAAGCATTGGAAGACAAATGAAGCTGAAGCCGTTGAAACAGGTGATATTGGTTTTCATATCTTCTATAAGTTTATAAAAAAGCTTCCAAGGAATGGACCCGTTTATACGCAAGTGGTGCTTGAGAATGTTGCAAAAGAAACTTTTGCTCCTTGGTAA 1545 42.33 MPDPKTVLSFAVSVAASAVLVRSIINDIVPEETKTYLYSGINYVFRQFSSQLTIVIDEFQGLFTNLVFEAANDYLGTIASPNAQRLKVSKAENDKSLIISIDRDEDVVDVYDDFNITWRLISTTIENSGQRNPSDLNAALKSEVRSYELTFHKKHRERILNSYIPYIMERARVIKEENKTIQLHTVDYRSWDSDTANLKHPMTFKTLAIDEELKKSIIEDLDNFVKGKEFYRKIGRAWKRGYLLYGPPGTGKSSLIASMANHLNFDVYDLDLTEIDRNSDLKVLLLGMSNRSILIIEDIDCSVKLKNRESEEEEDKSSQNKVISPEIRTVILNEMSDFLQLIFYPCYETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETGDIGFHIFYKFIKKLPRNGPVYTQVVLENVAKETFAPW 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29043691 29049873 + BLOR18897 Blo07g00965 63489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00965 514 SUPERFAMILY UBC-like 348 472 IPR016135 -
Blo07g00965 514 Pfam Ubiquitin-conjugating enzyme 348 472 IPR000608 -
Blo07g00965 514 Gene3D Ubiquitin Conjugating Enzyme 350 478 IPR016135 -
Blo07g00965 514 SMART ubc_7 343 490 - -
Blo07g00965 514 CDD UBCc 348 476 IPR000608 -
Blo07g00965 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 302 IPR027417 -
Blo07g00965 514 Gene3D - 195 349 IPR027417 -
Blo07g00965 514 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 340 489 IPR000608 -
Blo07g00965 514 PANTHER BCS1 AAA-TYPE ATPASE 6 322 - -
Blo07g00965 514 CDD AAA 239 300 - -
Blo07g00965 514 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 6 322 - -
Blo07g00965 514 Pfam ATPase family associated with various cellular activities (AAA) 243 320 IPR003959 GO:0005524|GO:0016887
Blo07g00965 514 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Blo07g00965 514 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 413 428 IPR023313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00965 K08900 BCS1; mitochondrial chaperone BCS1 - gmx:100778503 387.111
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00965 Blo10g00734 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00965 Blo-Chr7:29043691 Blo06g00140 Blo-Chr6:5591355 5.99E-106 dispersed
Blo14g00289 Blo-Chr14:2890769 Blo07g00965 Blo-Chr7:29043691 1.88E-31 dispersed
Blo07g00965 Blo-Chr7:29043691 Blo07g00967 Blo-Chr7:29086047 7.03E-79 proximal
Blo10g00734 Blo-Chr10:23031825 Blo07g00965 Blo-Chr7:29043691 9.84E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006747 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00965 Blo_Chr07 FPKM 6.647973 6.310182 9.482696 9.444655 6.079423 5.955185 5.982558 8.827576 9.277143 9.141804