Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00980 ATGAAGATTCAATGCAACGTCTGTGAGACGGCGGAGGCGCACGTTCTATGTTGCGCTGACGAGGCGGCGCTATGCTGGGCTTGCGACATGAAGGTTCACGCAGCCAACAAACTGGCTAGCAAGCACCAGAGGGTTCCTCTCTCTGGCTCTTCTTCCCAAATGCCCAAATGCGACATTTGCCAGGAGATGGGTGGCTACATCTTCTGTTTGGAGGATCGAGCTTTACTCTGCCGAAAATGTGATGTCGCCATCCACACGGTGAATACATATGTGTCGGCACATCAGAGGTTTCTTCTCACTGGTGTCAAAGTCAGTCTTGAACCCGCCGGACCTCCTACTTCCTCTTCTGAATCAAAGCCTCAGACGGGAGAGAAAGTGTTGGAACCGAAGTCTGGCTCAGGGCCTCCGATGAGCTTCTCAATGGCATCAGTTGGTGAATTCGGTCAACAGTTGCCTGTAAGTTCTCGTGGGGTAGGGGACTACACGCAGACTAAGGTCACAACACATAATGGAGGATTCGTATCGGGTGGGATTCATCAGTGGCAATTAGACGAGTTAATGGGGATGACGGGATTCAGTCAAAATTATGGCTTGGGCTATATGGACAATGATTCATCAAAGGCTGATAGCGGTAAGCTCGGGGACTCTGATTCGTCCATTCTAAGAACTGGCGAGGAAGATATTGAAGATGACGAGTGCTTGGGTCAGGTGCCGGATGCTTTGTGGGCGGTTCCTCACAACCCGTCTCCGCCTACTGCCTCCGGCCTGTATTGGCCAAGAAATTACAACACTTTGTTGGATAGCTCGGTCTATGTTCCTGACATATACAGCTCACCCGAGCAAAGGCCCCACCATCATCGACGAAATGGTGAAAGAGGGAGGAAGAAGATGGTTGAATATCAGATGAATCTTACAGATTGTTGGGAATTTGTGTCGATTTATGTGGTAGAGAGAGCAACATTCTCAAAACTTAGCTCAAGTTTTAACCTTTTTTCCTTGTGA 1002 49.2 MKIQCNVCETAEAHVLCCADEAALCWACDMKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMGGYIFCLEDRALLCRKCDVAIHTVNTYVSAHQRFLLTGVKVSLEPAGPPTSSSESKPQTGEKVLEPKSGSGPPMSFSMASVGEFGQQLPVSSRGVGDYTQTKVTTHNGGFVSGGIHQWQLDELMGMTGFSQNYGLGYMDNDSSKADSGKLGDSDSSILRTGEEDIEDDECLGQVPDALWAVPHNPSPPTASGLYWPRNYNTLLDSSVYVPDIYSSPEQRPHHHRRNGERGRKKMVEYQMNLTDCWEFVSIYVVERATFSKLSSSFNLFSL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29282753 29284668 + BLOR18912 Blo07g00980 63504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00980 333 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Blo07g00980 333 MobiDBLite consensus disorder prediction 108 139 - -
Blo07g00980 333 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 291 - -
Blo07g00980 333 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Blo07g00980 333 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 291 - -
Blo07g00980 333 SMART bboxneu5 4 47 IPR000315 GO:0008270
Blo07g00980 333 SMART bboxneu5 52 99 IPR000315 GO:0008270
Blo07g00980 333 CDD Bbox1_BBX-like 5 47 - -
Blo07g00980 333 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Blo07g00980 333 Gene3D Classic Zinc Finger 1 93 - -
Blo07g00980 333 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00980 - - - jre:109011878 379.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01583 Blo-Chr1:55642228 Blo07g00980 Blo-Chr7:29282753 2.97E-07 dispersed
Blo04g00532 Blo-Chr4:4583064 Blo07g00980 Blo-Chr7:29282753 2.80E-43 dispersed
Blo06g00321 Blo-Chr6:18407264 Blo07g00980 Blo-Chr7:29282753 4.55E-22 dispersed
Blo07g00980 Blo-Chr7:29282753 Blo18g00789 Blo-Chr18:22814417 1.20E-35 dispersed
Blo07g00980 Blo-Chr7:29282753 Blo07g00983 Blo-Chr7:29356810 2.39E-117 proximal
Blo01g00195 Blo-Chr1:2610431 Blo07g00980 Blo-Chr7:29282753 1.87E-42 transposed
Blo07g00112 Blo-Chr7:1568502 Blo07g00980 Blo-Chr7:29282753 4.79E-44 transposed
Blo10g00720 Blo-Chr10:22822165 Blo07g00980 Blo-Chr7:29282753 1.34E-154 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00936 . 175 518 C2C2-CO-like Transcription Factor Family AT5G57660 53.1 6.2e-65 245.0
Blo04g00532 . 1 191 C2C2-CO-like Transcription Factor Family AT1G75540 56.5 3.5e-54 209.1
Blo07g00980 . 1 295 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 3.3e-73 272.3
Blo06g00321 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 2.2e-52 202.2
Blo16g00074 BCT,CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT2G21320 56.4 1.2e-50 196.4
Blo06g00321 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.1 1.3e-53 206.5
Blo16g00074 BCT,CCT,ECH 1 179 C2C2-CO-like Transcription Factor Family AT4G38960 58.1 8.2e-53 203.8
Blo04g00894 BCT,CCT,ECH 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 9.1e-44 173.7
Blo04g00532 . 1 184 C2C2-CO-like Transcription Factor Family AT4G39070 55.4 3.4e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12648 PF00643 zf-B_box 8.70E-06 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00980 Blo_Chr07 FPKM 46.978264 48.796036 64.663628 64.784019 23.436657 24.571045 22.131115 115.09491 115.475121 108.31028