Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00995 ATGAATGATATTAGATCAACAGGGTTTGTTGAAAGTAGTTACAATTGGGGAATTAGTAATACGGGTATCTTCATGGACGATGACCGCTCACCTGACACCTACATTGGGACAATCTCATCTATGCTCTCAGTGACAACCAATCCTGAACTATATACAACTGCACGCCTCTCTGCGCTGTCTCTTACATATTATGGGTATTGTCTTGGAAATGGACCCTACACTGTTCAACTCCACTTTGCAGAGATCATGTTTACTAATGATAAGACATTTAGCAGTCTTGGTAGGCGCATATTTGATGTTTACATTCAGGGAAAGCTGGAGCTGGAGAATTTTGATATTGCAAGGGAAGAAAGTGGAGTTGGCATGCCAGTGGTGAGAAGCTTTCCCGTCAATATTACAGATGGTACCATTGAGATTCGTTTCTATTGGGCCGGAAAGGGGACAAATGGTATTCCAGGAAGAGGAGTCTATGGCCCTCTAATTTCAGCCATTGCAGTAGACCCTGGTAGGTAG 513 43.08 MNDIRSTGFVESSYNWGISNTGIFMDDDRSPDTYIGTISSMLSVTTNPELYTTARLSALSLTYYGYCLGNGPYTVQLHFAEIMFTNDKTFSSLGRRIFDVYIQGKLELENFDIAREESGVGMPVVRSFPVNITDGTIEIRFYWAGKGTNGIPGRGVYGPLISAIAVDPGR 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29458698 29459361 - BLOR18927 Blo07g00995 63519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00995 170 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 168 - -
Blo07g00995 170 Pfam Malectin domain 37 164 IPR021720 -
Blo07g00995 170 Gene3D - 6 168 - -
Blo07g00995 170 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 34 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00995 - - - fve:101292394 231.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00995 Blo-Chr7:29458698 Blo07g00981 Blo-Chr7:29286025 1.54E-88 dispersed
Blo07g00987 Blo-Chr7:29393190 Blo07g00995 Blo-Chr7:29458698 3.02E-46 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g50 . . . . . . . . . . . . . . . . . Bhi09g03547 . . . . . . . . . . . . . . . . . . . . Cme07g00514 Blo07g00995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014720 0 0 2 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 3 2 0 0 0 0 5 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00995 Blo_Chr07 FPKM 0.906397 1.414231 1.809459 1.995218 2.602936 0.865758 2.90492 1.747528 2.071482 2.04249