Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01000 ATGGCTGCCTCAGTTATGGCTTCAGTGAATATTAAACCATCTCCTTTCACTTTTGAGAAATCTGGAGCAGTGAGAGGTCTTCCTTCTCTCGCCAGAACGGCCTCCTTCAAAGTCGAGGCCAGCGGTGGGAAGAAGATCAAGACCGACAAGCCCTACGGAATTAATGGTGGCATGAGTTTGAGGGATGGCGTCGACTCATCAGGAAGGAAGGGAAAGGGAAAGGGTGTTTACCAATTTGTGGACAAATACGGTGCTAATGTGGATGGGTACAGTCCAATTTACGACACTAATGATTGGTCCCCAAGTGGTGATGTTTACGTGGGTGGTACAACTGGATTGGCCATTTGGGCTGTCACTCTTGCTGGTCTCCTGGCCGGCGGTGCACTTCTCGTCTACAATACCAGCGCTCTGGTGCAATAG 420 50.0 MAASVMASVNIKPSPFTFEKSGAVRGLPSLARTASFKVEASGGKKIKTDKPYGINGGMSLRDGVDSSGRKGKGKGVYQFVDKYGANVDGYSPIYDTNDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29587962 29589559 - BLOR18932 Blo07g01000 63524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01000 139 Pfam Photosystem II 10 kDa polypeptide PsbR 41 137 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Blo07g01000 139 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 138 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01000 K03541 psbR; photosystem II 10kDa protein - twl:119989304 233.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00683 Blo-Chr10:21901087 Blo07g01000 Blo-Chr7:29587962 3.45E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g965 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01586 Cam11g1653 Cec11g1681 Cco11g1678 Clacu11g1810 Cmu11g1624 Cre11g2040 Cone6ag0288 Cone9ag0323 . . . . . . Blo07g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004437 0 2 1 0 1 1 1 1 1 1 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g01000 Blo_Chr07 FPKM 1.158006 1.262107 1.912868 1.909931 11.347664 11.264201 12.042472 2.605123 2.746478 2.622391