Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01001 ATGGGCTTACCTAAGGGGAACCACCTGAACACCTATGGAGGGGTAGGAGGCGGCTCGCGTGGTTTGGACCTAGGGGGGGGACCGTTCCATATCTGGGATATTTCGAACGATGATTTTAAATCTCTAATGTCACAGATCTGGGATATTTCGAATGAGTGCGGACGTGATGGTCTCGTCCTTTCTGGAGCTGTATGCGCATGGAGTCTTGCGACCAAGGGCTTGTCCGTAACCTTGTTCGACTCTGGCCGTGGCCCCGGCGGTCGGATGTCAACAAGAAGCAGAGAAATTACAGAAGATGGGAAAGAGCTGTTTTTCAACCATGGCGCCCCATACTTTAATGTTAGCTATCCTGAAGTATTGAGTTTTGTTCGTGAGTGGGAATCACGAGGGATTTGCGCTGAATGGAAGGAGAAATTTGGGACTTTTGATTGCAAATCTAATCAGTTTGTCAACATAGAACAGGAAGGAATTCATGGCCGATATGTGGGTATTCCAGGAATGAATTCAATATGCAAAGCTTTATGTCGTGAGCCTGGGGTTGAAAGTAAGTTCTCTTTGACTGTTGGTACGATAGAATGGTTGGAGGGTGAGAAGTTGTGGAAATTAAGCGATATGGATGGACATAATCTTGGTCTTTTTAAGGCTGTTGTTGCATCTGATAAAAATGTAGTTTCACCGAGGTTTACCAGTGTAACTGGACGCCCTCCTCCCCTTGATTTAAGCTTGGTTCCAGAGTTAGCGGTAAAGTTGCAAAATATTCCTGTCAGTCCACGTTTTGTTCTCATGCTAGCATTTAAAGAGTCTATCTCGATACCTGTAAAAGGTTTCTTAATCCAGAGTTCTAAGGTTTTAAGCTGGGCTCATTGCGACACCAGTAAACCAGGCCATTCTACTGCTGGGGAACTCTGGGTAGTGCATTCCACAGCTGAGTATGCAGAAAGGGTGATTGGTGAAACTGGACTTAAGAAACCATCTGATGCCACGTTGAAGAAAGTTGCTGAGGAACTATTTTATGAATTGCAAAGAACAGGACTTGGTTTTCCTGGCCCTTTTTTCATGAAAGCTCATAGATGGGGCAGTGCATTCCCAGCAACAAGCATAGCCAAACAAGAGAAATGCCTTTGGGATGGGAAGAAGAAGCTTGCTATCTGCGGAGATTTCTGTGTCAGTCCGAGCGTAGAAGGCGCAATCGTCAGTGGCTTGGCTGCTGCTTCGAGAATCGCACACATGCTTAGCTGCATTTGA 1245 45.78 MGLPKGNHLNTYGGVGGGSRGLDLGGGPFHIWDISNDDFKSLMSQIWDISNECGRDGLVLSGAVCAWSLATKGLSVTLFDSGRGPGGRMSTRSREITEDGKELFFNHGAPYFNVSYPEVLSFVREWESRGICAEWKEKFGTFDCKSNQFVNIEQEGIHGRYVGIPGMNSICKALCREPGVESKFSLTVGTIEWLEGEKLWKLSDMDGHNLGLFKAVVASDKNVVSPRFTSVTGRPPPLDLSLVPELAVKLQNIPVSPRFVLMLAFKESISIPVKGFLIQSSKVLSWAHCDTSKPGHSTAGELWVVHSTAEYAERVIGETGLKKPSDATLKKVAEELFYELQRTGLGFPGPFFMKAHRWGSAFPATSIAKQEKCLWDGKKKLAICGDFCVSPSVEGAIVSGLAAASRIAHMLSCI 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29591070 29601744 - BLOR18933 Blo07g01001 63525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01001 414 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 60 411 - -
Blo07g01001 414 SUPERFAMILY FAD/NAD(P)-binding domain 60 411 IPR036188 -
Blo07g01001 414 Gene3D - 91 370 - -
Blo07g01001 414 Pfam NAD(P)-binding Rossmann-like domain 60 125 - -
Blo07g01001 414 Gene3D - 60 405 IPR036188 -
Blo07g01001 414 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 60 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01001 K18208 RNLS; renalase [EC:1.6.3.5] - csv:101216187 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01001 Blo-Chr7:29591070 Blo11g00455 Blo-Chr11:4035318 8.44E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0979 . . . . Blo07g01001 . . . . . . . . . . . . . . . . . . . . . . . Cla07g01016 Cam07g1094 Cec07g1166 Cco07g1145 Clacu07g1067 Cmu07g1058 Cre07g1435 . . Chy07g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009456 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g01001 Blo_Chr07 FPKM 11.559876 12.67972 27.003572 28.240406 79.780823 83.260002 74.466484 34.537506 34.75597 33.15514