Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01168 ATGAATGGCGTTCACTTTCCTCTCCGGTACGCGCCAACTGCGCCGCGTTTGTCGTCTACATGTTGCTTCCAGAACCCTAGGCCTAGTTTCCTAATTCATCACATTCCTAATTCTACCCACCATCCTCGTAAGATCTCCTACTCCAGTACCATGGGGCGTGGTTTTGTTACAGTGAAGGCACAAATGACGACGGATGAGAAGAAGATTTCGGACGATAGAATGCTCGTATATGTGCCGCCTCATCCATTGATCAAGCACTGGGTTTCAGTATTGAGAAATGAACAGACTCCCTGCGCTATTTTCAGAAACGCCATGGGAGAATTGGGAAGACTACTTATGTATGAAGCCTCAAGGGATTGGCTTCCTATTGTGTCAGGAGAGATTCAATCTCCAATGGGTGTTGCCTCAGTTGAATTTATTGATCCTAGAGAGCCAGTGGCAGTTGTTCCGATCCTTCGAGCTGGCCTAGCTCTTGTTGAACATGCATCATCCATCTTGCCTGCAATAAAAACTTATCATTTAGGGGTTAGTAGAGATGAGGAGACACTTCAACCGACAATATATCTTAACAAGTTGCCTGAAAGTTTTCCAGAAGGATCTCGAGTGTTTGTGGTTGACCCTATGCTGGCTACAGGTGGCACAATAATTGCAGCACTTGATCTTTTAAAGGAACGCGGGGTGGGAAACAAGCAAATTAAAGTGATATCTGCTGTAGCTGCCCCTCCCGCCCTTCAAAAGTTGAGCGAAAAATTTCCAGGACTTCATGTATACACTGGAATCATCGATCCCATAGTTAACGAGAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGAGACCGTAGCTTTGGAACTGATATTACGATTTATGATAAGAAGTATTTGGTTGCTATTGTCCATGCTAAGAAACTAATCGGCTTTTGGAGCTCGGTATCATCATCGGTTCATGCATCAAGAAATCTCACCTCTCTAAATTCAATAAGAACAGAAGTGGGAATGAGGTCAAACGCCGGCGTAGCCACCGTCGCAGGAGCAACTAGAAGAGCCCCCGTTGATGTCGCCGGGTTGGCGAGGTTTGGTGCTGAGACAGCAGCAAAGGAGGCCTATGAGCATCATCACGCACCAAGCGGAGCCTAA 1137 46.17 MNGVHFPLRYAPTAPRLSSTCCFQNPRPSFLIHHIPNSTHHPRKISYSSTMGRGFVTVKAQMTTDEKKISDDRMLVYVPPHPLIKHWVSVLRNEQTPCAIFRNAMGELGRLLMYEASRDWLPIVSGEIQSPMGVASVEFIDPREPVAVVPILRAGLALVEHASSILPAIKTYHLGVSRDEETLQPTIYLNKLPESFPEGSRVFVVDPMLATGGTIIAALDLLKERGVGNKQIKVISAVAAPPALQKLSEKFPGLHVYTGIIDPIVNEKGFIIPGLGDAGDRSFGTDITIYDKKYLVAIVHAKKLIGFWSSVSSSVHASRNLTSLNSIRTEVGMRSNAGVATVAGATRRAPVDVAGLARFGAETAAKEAYEHHHAPSGA 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31567588 31570629 - BLOR19100 Blo07g01168 63692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01168 378 CDD PRTases_typeI 141 261 IPR000836 -
Blo07g01168 378 Pfam Uracil phosphoribosyltransferase 78 285 - -
Blo07g01168 378 SUPERFAMILY PRTase-like 76 284 IPR029057 -
Blo07g01168 378 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 34 281 - -
Blo07g01168 378 PANTHER URIDINE KINASE 34 281 - -
Blo07g01168 378 Gene3D - 63 285 IPR029057 -
Blo07g01168 378 TIGRFAM upp: uracil phosphoribosyltransferase 76 285 IPR005765 GO:0004845|GO:0006223
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01168 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - pvy:116114985 452.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01168 Blo-Chr7:31567588 Blo03g01488 Blo-Chr3:41694206 2.87E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo02g00658 . 70 526 PRT Gene Family AT2G16570 81.7 1.9e-217 752.3
Blo02g00660 . 1 395 PRT Gene Family AT2G16570 84.8 2.7e-195 678.7
Blo02g00658 . 71 522 PRT Gene Family AT4G34740 83.4 1.0e-218 756.5
Blo02g00660 . 1 395 PRT Gene Family AT4G34740 85.3 1.4e-196 682.9
Blo02g00658 . 70 520 PRT Gene Family AT4G38880 72.4 2.1e-186 649.0
Blo02g00660 . 1 368 PRT Gene Family AT4G38880 74.3 8.7e-156 547.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo18g00155 . 3 188 PRT Gene Family AT1G71750 61.9 6.5e-64 240.7
Blo03g01488 . 15 469 PRT Gene Family AT1G55810 82.9 3.9e-221 764.2
Blo03g00493 . 170 624 PRT Gene Family AT1G55810 83.6 8.6e-221 763.1
Blo17g00327 . 19 218 PRT Gene Family AT1G55810 59.2 2.2e-59 226.9
Blo17g00329 . 39 153 PRT Gene Family AT1G55810 84.3 1.8e-53 207.2
Blo03g00493 . 221 628 PRT Gene Family AT3G27440 76.0 2.5e-182 635.2
Blo03g01488 . 66 473 PRT Gene Family AT3G27440 73.8 2.0e-179 625.5
Blo17g00329 . 39 153 PRT Gene Family AT3G27440 77.4 3.3e-49 193.0
Blo17g00327 . 81 218 PRT Gene Family AT3G27440 70.3 2.8e-48 189.9
Blo03g01488 . 3 468 PRT Gene Family AT3G27190 74.9 1.3e-206 716.1
Blo03g00493 . 157 623 PRT Gene Family AT3G27190 73.7 1.6e-204 709.1
Blo17g00327 . 1 218 PRT Gene Family AT3G27190 77.2 1.4e-88 323.9
Blo17g00329 . 34 153 PRT Gene Family AT3G27190 84.2 9.3e-56 214.9
Blo07g01168 . 48 286 PRT Gene Family AT3G53900 75.0 1.6e-103 372.9
Blo03g00493 . 155 624 PRT Gene Family AT4G26510 83.9 1.9e-231 798.5
Blo03g01488 . 1 469 PRT Gene Family AT4G26510 83.1 3.1e-229 791.2
Blo17g00327 . 12 218 PRT Gene Family AT4G26510 63.3 1.6e-65 247.3
Blo17g00329 . 39 153 PRT Gene Family AT4G26510 86.1 6.5e-54 208.8
Blo03g01488 . 11 471 PRT Gene Family AT5G40870 74.8 1.9e-205 712.2
Blo03g00493 . 157 626 PRT Gene Family AT5G40870 73.0 2.7e-204 708.4
Blo17g00327 . 1 218 PRT Gene Family AT5G40870 78.4 6.2e-92 335.1
Blo17g00329 . 39 153 PRT Gene Family AT5G40870 87.0 1.6e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g01168 Blo_Chr07 FPKM 29.293818 30.768873 37.884956 36.413944 36.144321 37.849171 38.534111 36.521339 35.857399 35.380848