Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01240 ATGACCTCCACAGCAATGGCCGACTACGACCTCACCCAACGAATCGCTCCCAATCTCGATCGTCACCTCGTATTCCCGCTGCTTGAATTTCTTCAGGAACGGCAGCTTCACCCCGATGAGCAGATCCTCAAGTCTAAGATTGAACTTCTCAATAAGACCAACATGGTGGACTACGCCATGGACATTCACAAGTCGCTTTACCATTCCGAAGAAGTGCCTCAGGATATGGTGGAGAGGAGAGCTGAGGTGGTTGCGCGGCTTAAGGCTTTGGAAGAAGGTGCGGCGCCTATTGTTGCTTTTCTTCAGAATGCCTCTGCGGTTCAGGAGTTGAGGGCTGATAAGCATTATAATCTTCAAATGCTTAATGATCGCTATCAGATCGGTCCAAACCAGATAGAGGCGTTGTATCAATATGCTAAGTTTCAGTTTGAGTGTGGAAACTACTCTGGAGCTGCAGATTATTTGTATCAGTACAGGGCCTTATGCACAAATAGCGAAAGGAGTTTGAGTGCATTATGGGGAAAGCTGGCTGCAGAAATATTGATGCAGAATTGGGACATTGCTCTGGAAGAACTGAATCGATTGAAAGAAATTATTGACTCAAAGAGTTTTCAATCACCAATGAGTCAGGTCCAAAGCCGAATATGGCTAATGCACTGGAGTCTGTTCATCTTTTTTAATCATGATAATGGAAGAACACAGATTATTGACCTATTTAATCAAGACAAGTATTTAAATGCCATTCAAACTAATGCTCCCCATCTGTTACGCTACCTGGCCACTGCATTCATTGTGAACAAGAGGAGGAGACCTCAGTTCAAAGATTTTATAAAGGTTATGCAACCAGACCAGTGCACGTACAAAGATCCTATCACAGAGTTCTTAGCTTGTGTGTATGTCAACTATGATTTTGATGGCGCACAAAAGAAAATGAAAGAGTGCGAAGAAGTGATATTGAATGATCCATTTCTTGGTAAACGAGTTGAAGATGGAAACTATTCAACTGTTCCATTGAGAGATGAGTTTCTAGAGAATGCACGTTTATTCATCTTTGAGACATATTGCCAAATACATCGGCGTATAGAAATGAGTGTTCTTGCTGAGAAATTGAACCTGAATTATGAGGATGCTGAGAGATGGATTGCAAATCTTATCCAAGGCTCAAAGCTCGACGCCAGGATTGATTCAAAGTTGGGAACCGTCATCATGGAACCCAACCATCCAAATGTGTACGAGCAGCTGATAGACCACACCAAGGCATTATCGGGGCGAACTTACAAGTTAGTCAGTCAACTCCTAGAACATTCCCAGACTCAGGCAGCTCGTTAA 1329 43.04 MTSTAMADYDLTQRIAPNLDRHLVFPLLEFLQERQLHPDEQILKSKIELLNKTNMVDYAMDIHKSLYHSEEVPQDMVERRAEVVARLKALEEGAAPIVAFLQNASAVQELRADKHYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFQSPMSQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVMQPDQCTYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDGNYSTVPLRDEFLENARLFIFETYCQIHRRIEMSVLAEKLNLNYEDAERWIANLIQGSKLDARIDSKLGTVIMEPNHPNVYEQLIDHTKALSGRTYKLVSQLLEHSQTQAAR 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32455567 32458557 + BLOR19172 Blo07g01240 63764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01240 442 Pfam eIF3 subunit 6 N terminal domain 10 142 IPR019010 -
Blo07g01240 442 Gene3D - 241 438 - -
Blo07g01240 442 SUPERFAMILY TPR-like 125 197 IPR011990 GO:0005515
Blo07g01240 442 PIRSF Transl_init_eIF3e 5 442 IPR016650 GO:0003743|GO:0005737|GO:0005852
Blo07g01240 442 SUPERFAMILY Winged helix DNA-binding domain 337 408 IPR036390 -
Blo07g01240 442 SMART eIF3_N_2 10 142 IPR019010 -
Blo07g01240 442 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 337 421 - -
Blo07g01240 442 ProSiteProfiles PCI domain profile. 224 408 IPR000717 -
Blo07g01240 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 6 440 IPR016650 GO:0003743|GO:0005737|GO:0005852
Blo07g01240 442 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 7 434 IPR016650 GO:0003743|GO:0005737|GO:0005852
Blo07g01240 442 Pfam PCI domain 290 404 IPR000717 -
Blo07g01240 442 SMART PINT_4 337 421 IPR000717 -
Blo07g01240 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 6 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01240 Blo-Chr7:32455567 Blo16g00722 Blo-Chr16:28037524 1.23E-103 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01240 K03250 - rcu:8268657 811.986