Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01280 ATGAACTCGAAATATCGTCAGACGGAGAAGATCATGGCTCCTGGAGGTGGTGCTTATAAAGAAGTTGTACAATCCCACCCCTCGGTTTCTGATTACGACACAACGGCAGCAAAACCAGACATAAGTTCTACTTTTACTAAACTTTCAGTGGGTAGGAGCGAAATATCTTCGACCAATGGAGTTCACGAGTTGCTCCAGTGTCCTGTCTGTCTAAATTTGATGTACCCTCCAATTCATCAGTGCCCAAATGGCCATACACTCTGTGCCAATTGCAAGATCAAGGTGCATAACTGTTGCCCAACTTGCCGGAACGAACTAGGCGATATCAGGTGCCTGGCTTTGGAAAAGGTGGCTGAATCTTTAGAACTTCCATGCCAGTATCAGAGCTTAGGGTGTAGTGATATTTTTCCGTATTACTCGAAGGTTCAACACGAGCAAAACTGCCGACTCCGGCCCTTCAATTGCCCCTATGCTGGCTCAGAGTGCTCCGTTATGGGCGACATTCCAACCCTCGTTGCGCATCTCAAGGATGATCACAAGGTCGACATGCACGATGGTTGTACGTTCAACCATCGATATGTCAAATCAAATCCCGATGAGGTGGAAAACGCCACTTGGATGCTTACGAGTTCGAGGACCTGTATTCTTTTAGGTCGAGCTGACAAACTTGCAACTATACGAGTCTTCAATTGCTTTGGACGGCAATTCTGCTTGCACTTTGAGGCGTTCCTTCTAGGCACTTGTCCGGTTTATATGGCGTTTTTACGGTTTATGGGAGACGACAACGAAGCAAAGAAATTCAGCTACACCTTAGAAGTAGGTGGCCATGGTAGAAAGCTAATATGGCAGGGAATTCCGAGGAGCATTCGCCAAGATCATATGAAAGTGCGCGATAGTCAAGATGGGCTCATTATTCAGAAGAATCTCGCACTCTACTTTTCCGGCGGAGACAAGAAAGAGCTGAAGTTAAGGGTAACCGGCCGAATCTGGAAAGAAGAATGA 1002 46.51 MNSKYRQTEKIMAPGGGAYKEVVQSHPSVSDYDTTAAKPDISSTFTKLSVGRSEISSTNGVHELLQCPVCLNLMYPPIHQCPNGHTLCANCKIKVHNCCPTCRNELGDIRCLALEKVAESLELPCQYQSLGCSDIFPYYSKVQHEQNCRLRPFNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTSSRTCILLGRADKLATIRVFNCFGRQFCLHFEAFLLGTCPVYMAFLRFMGDDNEAKKFSYTLEVGGHGRKLIWQGIPRSIRQDHMKVRDSQDGLIIQKNLALYFSGGDKKELKLRVTGRIWKEE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33007117 33008614 + BLOR19212 Blo07g01280 63804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01280 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 175 IPR013083 -
Blo07g01280 333 SUPERFAMILY TRAF domain-like 120 330 - -
Blo07g01280 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 121 IPR013083 -
Blo07g01280 333 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270
Blo07g01280 333 Pfam Seven in absentia protein family 109 326 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo07g01280 333 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Blo07g01280 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 12 332 - -
Blo07g01280 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 206 326 IPR008974 GO:0005515
Blo07g01280 333 SUPERFAMILY RING/U-box 61 107 - -
Blo07g01280 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 12 332 - -
Blo07g01280 333 CDD RING-HC_SIAHs 65 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01280 Blo-Chr7:33007117 Blo13g00641 Blo-Chr13:28959450 1.72E-153 dispersed
Blo07g01280 Blo-Chr7:33007117 Blo15g00087 Blo-Chr15:726299 3.43E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01280 K04506 - rcu:8260973 533.487