Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01301 ATGGCAGATATCGACGTGCCTCCTTATTTTCTCTGCCCGATTTCTCTAGAGATCATGAAAGATCCTGTCACTGTTTCGTCTGGGATAACCTACGATCGTCAAAGCATAGAGAAATGGTTGTATTCAAATAGAAATGATTTTTGTCCTGTTTCGAAACAACTCGTCTCCGGCTCCGATCTCACTCCGAACCATACTCTCCGGCGACTTATACAAGCGTGGTGCACCGTCAACGCCTCCAACGACGTCCAGAGAATTCCGACGCCGAAACCTCCTATTAGCAAGAAGCAGATCGTCAAGATTTTGAATGATGCGAAATCACCTCTCTCTCAGCTAAAATGTCTAAAAAATCTCCGATCCATTGCCGCCGAGAGCGAGAGTAATAAACGTTGCATCGAATCTGCCGGAGCCATCGAGTTTTTAGCTTCAATAGTAATTTCCTCCGTCCCCTACGCTCCGGAAGAAGATTCCAGCATGGGTTTGGATCGCACTAGAGCGTGTGATGAGGCTTTAAGTACTCTACATAATCTCCAAATCTCCGAAGCCGGGATGAAATCTCTTGGCGGAAAAAATGGCGAATTCATCGAAGCCCTAGTCAAAGTAATCCAACGAGGGAGCTACGATTCACGAGCCTATTCAACCATGTTATTGAAATCAATACTCGAACTTACCGATTCTACAAAACTGAGCAATCTCAGGGTCGCGTTCTTCACAGAAATAATTCAAGTTCTCAGCGATCAAATTTCCCACCAATCTTCTATTGCTGCATTGCAAATACTGATAAACCTTCTTCCATGTGGGCGGAATCGACTAAAAGCTGTCGAGGCCGGGGGCGTAACTGTTCTTATCGAGCTTCTTCTCACCTCGCCGGAACGTCGGCAAAGCGAGATGATGCTCACTGCCTTGGACTTGCTATGTGGGTGCGCAAACGGGCGGGCCGAGTTGCTCAATCACGGAGCGGGTTTGGCGGTGGTGTCGAAGAAGATTCTTAGGGTTTCTCAGTTAGGAAACGAGAAATCTGTGAGGATCTTGAACTCAATATCGAAATACTCCGCCACTCCAGCTGTTCTTCAGGATATGCTGAGTCTAGGAGTTGTCGCAAAATTGTGTTTGATTCTTCAGGTCGAATGTGGAAGCAAGGCAAAGGAGAAAGCAAAACAGATTCTTAAGCTCCACGGTCGATCATGGCGGAATTCGCCATGCATTCCTGCAAATTTGCTTTCTTCTTATCCATCGTCTTCTTTAAAAAAAAGGGATCAAGAGGATTTGTGA 1269 46.1 MADIDVPPYFLCPISLEIMKDPVTVSSGITYDRQSIEKWLYSNRNDFCPVSKQLVSGSDLTPNHTLRRLIQAWCTVNASNDVQRIPTPKPPISKKQIVKILNDAKSPLSQLKCLKNLRSIAAESESNKRCIESAGAIEFLASIVISSVPYAPEEDSSMGLDRTRACDEALSTLHNLQISEAGMKSLGGKNGEFIEALVKVIQRGSYDSRAYSTMLLKSILELTDSTKLSNLRVAFFTEIIQVLSDQISHQSSIAALQILINLLPCGRNRLKAVEAGGVTVLIELLLTSPERRQSEMMLTALDLLCGCANGRAELLNHGAGLAVVSKKILRVSQLGNEKSVRILNSISKYSATPAVLQDMLSLGVVAKLCLILQVECGSKAKEKAKQILKLHGRSWRNSPCIPANLLSSYPSSSLKKRDQEDL 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33251332 33252600 - BLOR19233 Blo07g01301 63825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01301 422 SUPERFAMILY RING/U-box 4 77 - -
Blo07g01301 422 SUPERFAMILY ARM repeat 97 394 IPR016024 -
Blo07g01301 422 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Blo07g01301 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Blo07g01301 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 411 - -
Blo07g01301 422 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Blo07g01301 422 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Blo07g01301 422 Gene3D - 94 399 IPR011989 -
Blo07g01301 422 CDD RING-Ubox_PUB 10 53 IPR045210 -
Blo07g01301 422 PANTHER WDSAM1 PROTEIN 1 411 IPR045185 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01301 - - - mnt:21399943 549.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01301 Blo-Chr7:33251332 Blo08g00063 Blo-Chr8:542463 8.09E-158 dispersed
Blo16g00641 Blo-Chr16:25629780 Blo07g01301 Blo-Chr7:33251332 1.06E-75 transposed
Blo01g01249 Blo-Chr1:47405528 Blo07g01301 Blo-Chr7:33251332 0 wgd
Blo14g00246 Blo-Chr14:2197355 Blo07g01301 Blo-Chr7:33251332 5.06E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00377 . 1 1057 U-box Gene Family AT5G15400 68.8 0.0e+00 1414.4
Blo04g01074 . 194 766 U-box Gene Family AT2G23140 52.7 4.7e-71 266.2
Blo01g00365 BCT,CCT 69 829 U-box Gene Family AT1G24330 59.2 8.5e-245 843.6
Blo16g01194 BCT,CCT 127 884 U-box Gene Family AT1G24330 58.9 7.2e-244 840.5
Blo06g00829 CCT 1 743 U-box Gene Family AT1G24330 56.2 4.6e-214 741.5
Blo16g01191 . 7 567 U-box Gene Family AT1G24330 59.3 1.1e-194 677.2
Blo16g01194 BCT,CCT 127 882 U-box Gene Family AT1G67530 58.6 3.2e-239 825.1
Blo01g00365 BCT,CCT 69 829 U-box Gene Family AT1G67530 58.1 3.0e-237 818.5
Blo06g00829 CCT 1 742 U-box Gene Family AT1G67530 55.3 2.2e-208 722.6
Blo16g01191 . 7 570 U-box Gene Family AT1G67530 58.8 4.5e-193 671.8
Blo08g00174 . 1 359 U-box Gene Family AT4G21350 57.6 7.1e-112 401.0
Blo10g00673 . 134 457 U-box Gene Family AT3G07360 52.6 1.4e-84 310.1
Blo06g00511 . 131 454 U-box Gene Family AT3G07360 61.3 1.6e-80 296.6
Blo05g00283 . 174 497 U-box Gene Family AT3G07360 60.4 3.7e-80 295.4
Blo11g00735 BCT 241 453 U-box Gene Family AT1G71020 66.8 7.3e-77 285.0
Blo06g01023 BCT 245 457 U-box Gene Family AT1G71020 65.9 1.8e-75 280.4
Blo04g00330 CCT 250 422 U-box Gene Family AT1G71020 56.3 5.4e-48 189.1
Blo03g01130 . 257 426 U-box Gene Family AT1G71020 57.1 4.6e-47 186.0
Blo14g00121 CCT 268 430 U-box Gene Family AT1G71020 55.5 1.1e-45 181.4
Blo11g00735 BCT 1 657 U-box Gene Family AT1G23030 57.3 2.0e-119 426.8
Blo06g01023 BCT 1 658 U-box Gene Family AT1G23030 57.0 3.6e-113 406.0
Blo03g01130 . 89 635 U-box Gene Family AT2G28830 57.7 8.8e-101 364.8
Blo03g01237 CCT 265 803 U-box Gene Family AT2G28830 57.9 1.5e-100 364.0
Blo14g00121 CCT 103 646 U-box Gene Family AT2G28830 57.2 2.1e-94 343.6
Blo03g01130 . 1 633 U-box Gene Family AT3G46510 67.3 3.5e-154 542.3
Blo03g01237 CCT 160 813 U-box Gene Family AT3G46510 63.5 7.3e-144 508.1
Blo14g00121 CCT 1 639 U-box Gene Family AT3G46510 62.4 1.4e-139 493.8
Blo04g00330 CCT 11 624 U-box Gene Family AT3G46510 53.5 1.5e-104 377.5
Blo18g00747 . 28 641 U-box Gene Family AT3G46510 52.1 4.3e-96 349.4
Blo04g00330 CCT 14 630 U-box Gene Family AT3G54850 59.7 3.6e-132 469.2
Blo03g01130 . 8 624 U-box Gene Family AT3G54850 53.5 1.1e-101 367.9
Blo03g01237 CCT 167 794 U-box Gene Family AT3G54850 52.4 2.8e-92 336.7
Blo18g00747 . 36 645 U-box Gene Family AT5G42340 64.8 5.0e-145 511.9
Blo15g00428 . 23 641 U-box Gene Family AT5G42340 60.7 1.4e-118 424.1
Blo01g01030 . 9 660 U-box Gene Family AT5G01830 56.1 3.6e-191 665.2
Blo11g00265 . 1 716 U-box Gene Family AT1G29340 64.6 6.0e-232 800.8
Blo07g01301 . 3 411 U-box Gene Family AT3G52450 54.4 9.1e-127 450.7
Blo01g01249 . 1 393 U-box Gene Family AT3G52450 53.4 4.1e-119 425.2
Blo07g01301 . 3 410 U-box Gene Family AT2G35930 55.3 5.0e-127 451.4
Blo01g01249 . 1 392 U-box Gene Family AT2G35930 53.3 3.4e-115 412.1
Blo08g00063 . 6 400 U-box Gene Family AT2G35930 51.6 9.9e-115 410.6
Blo05g00558 . 1 418 U-box Gene Family AT5G64660 53.4 2.0e-118 422.9
Blo05g00558 . 1 418 U-box Gene Family AT5G09800 51.6 2.7e-104 375.9
Blo04g01095 . 1 449 U-box Gene Family AT3G49810 71.5 2.1e-179 625.5
Blo16g00339 . 1 449 U-box Gene Family AT3G49810 69.4 2.3e-173 605.5
Blo17g00893 . 1 448 U-box Gene Family AT3G49810 62.2 7.1e-151 530.8
Blo04g01095 . 1 449 U-box Gene Family AT5G65920 67.0 7.3e-164 573.9
Blo16g00339 . 1 449 U-box Gene Family AT5G65920 66.2 2.3e-162 568.9
Blo17g00893 . 19 448 U-box Gene Family AT5G65920 63.7 1.2e-150 530.0
Blo18g00061 . 504 786 U-box Gene Family AT2G45910 51.2 7.4e-77 285.8
Blo15g00114 . 57 569 U-box Gene Family AT4G25160 56.2 3.4e-162 569.3
Blo15g00115 . 17 192 U-box Gene Family AT4G25160 53.4 2.1e-47 188.0
Blo18g00742 CCT 4 813 U-box Gene Family AT1G76390 63.9 4.6e-281 964.1
Blo01g01639 CCT 12 813 U-box Gene Family AT1G76390 60.1 3.7e-267 917.9
Blo18g00742 CCT 7 813 U-box Gene Family AT1G20780 63.7 9.1e-282 966.5
Blo01g01639 CCT 12 809 U-box Gene Family AT1G20780 60.5 1.5e-268 922.5
Blo01g00365 BCT,CCT 69 829 U-box Gene Family AT1G27910 62.1 1.5e-265 912.5
Blo16g01194 BCT,CCT 127 883 U-box Gene Family AT1G27910 61.0 9.1e-255 876.7
Blo06g00829 CCT 1 745 U-box Gene Family AT1G27910 58.8 7.2e-236 813.9
Blo16g01191 . 7 588 U-box Gene Family AT1G27910 55.4 3.6e-187 652.1
Blo06g00020 . 1 593 U-box Gene Family AT5G67530 75.4 8.3e-264 906.4
Blo06g00019 . 1 153 U-box Gene Family AT5G67530 72.5 1.4e-56 218.0
Blo06g00015 . 1 166 U-box Gene Family AT5G67530 56.6 3.1e-53 206.8
Blo16g00624 . 681 808 U-box Gene Family AT5G67530 56.3 4.1e-37 153.3
Blo15g00114 . 52 569 U-box Gene Family AT5G61560 55.9 1.0e-155 547.7
Blo15g00114 . 57 569 U-box Gene Family AT5G61550 58.4 4.0e-171 599.0
Blo15g00114 . 5 569 U-box Gene Family AT5G51270 51.6 1.1e-154 544.3
Blo02g00770 . 63 585 U-box Gene Family AT1G04510 72.3 2.8e-223 771.5
Blo07g00287 BCT 30 515 U-box Gene Family AT1G04510 73.1 1.3e-207 719.5
Blo02g00770 . 63 549 U-box Gene Family AT2G33340 72.9 1.9e-210 728.8
Blo07g00287 BCT 30 483 U-box Gene Family AT2G33340 72.7 1.3e-193 672.9
Blo10g00672 . 7 277 U-box Gene Family AT3G07370 60.5 3.6e-92 335.1
Blo17g00377 . 1 1057 U-box Gene Family AT5G15400 68.8 0.0e+00 1414.4
Blo04g01074 . 194 766 U-box Gene Family AT2G23140 52.7 4.7e-71 266.2
Blo01g00365 BCT,CCT 69 829 U-box Gene Family AT1G24330 59.2 8.5e-245 843.6
Blo16g01194 BCT,CCT 127 884 U-box Gene Family AT1G24330 58.9 7.2e-244 840.5
Blo06g00829 CCT 1 743 U-box Gene Family AT1G24330 56.2 4.6e-214 741.5
Blo16g01191 . 7 567 U-box Gene Family AT1G24330 59.3 1.1e-194 677.2
Blo16g01194 BCT,CCT 127 882 U-box Gene Family AT1G67530 58.6 3.2e-239 825.1
Blo01g00365 BCT,CCT 69 829 U-box Gene Family AT1G67530 58.1 3.0e-237 818.5
Blo06g00829 CCT 1 742 U-box Gene Family AT1G67530 55.3 2.2e-208 722.6
Blo16g01191 . 7 570 U-box Gene Family AT1G67530 58.8 4.5e-193 671.8
Blo08g00174 . 1 359 U-box Gene Family AT4G21350 57.6 7.1e-112 401.0
Blo10g00673 . 134 457 U-box Gene Family AT3G07360 52.6 1.4e-84 310.1
Blo06g00511 . 131 454 U-box Gene Family AT3G07360 61.3 1.6e-80 296.6
Blo05g00283 . 174 497 U-box Gene Family AT3G07360 60.4 3.7e-80 295.4
Blo11g00735 BCT 241 453 U-box Gene Family AT1G71020 66.8 7.3e-77 285.0
Blo06g01023 BCT 245 457 U-box Gene Family AT1G71020 65.9 1.8e-75 280.4
Blo04g00330 CCT 250 422 U-box Gene Family AT1G71020 56.3 5.4e-48 189.1
Blo03g01130 . 257 426 U-box Gene Family AT1G71020 57.1 4.6e-47 186.0
Blo14g00121 CCT 268 430 U-box Gene Family AT1G71020 55.5 1.1e-45 181.4
Blo11g00735 BCT 1 657 U-box Gene Family AT1G23030 57.3 2.0e-119 426.8
Blo06g01023 BCT 1 658 U-box Gene Family AT1G23030 57.0 3.6e-113 406.0
Blo03g01130 . 89 635 U-box Gene Family AT2G28830 57.7 8.8e-101 364.8
Blo03g01237 CCT 265 803 U-box Gene Family AT2G28830 57.9 1.5e-100 364.0
Blo14g00121 CCT 103 646 U-box Gene Family AT2G28830 57.2 2.1e-94 343.6
Blo03g01130 . 1 633 U-box Gene Family AT3G46510 67.3 3.5e-154 542.3
Blo03g01237 CCT 160 813 U-box Gene Family AT3G46510 63.5 7.3e-144 508.1
Blo14g00121 CCT 1 639 U-box Gene Family AT3G46510 62.4 1.4e-139 493.8
Blo04g00330 CCT 11 624 U-box Gene Family AT3G46510 53.5 1.5e-104 377.5
Blo18g00747 . 28 641 U-box Gene Family AT3G46510 52.1 4.3e-96 349.4
Blo04g00330 CCT 14 630 U-box Gene Family AT3G54850 59.7 3.6e-132 469.2
Blo03g01130 . 8 624 U-box Gene Family AT3G54850 53.5 1.1e-101 367.9
Blo03g01237 CCT 167 794 U-box Gene Family AT3G54850 52.4 2.8e-92 336.7
Blo18g00747 . 36 645 U-box Gene Family AT5G42340 64.8 5.0e-145 511.9
Blo15g00428 . 23 641 U-box Gene Family AT5G42340 60.7 1.4e-118 424.1
Blo01g01030 . 9 660 U-box Gene Family AT5G01830 56.1 3.6e-191 665.2
Blo11g00265 . 1 716 U-box Gene Family AT1G29340 64.6 6.0e-232 800.8
Blo07g01301 . 3 411 U-box Gene Family AT3G52450 54.4 9.1e-127 450.7
Blo01g01249 . 1 393 U-box Gene Family AT3G52450 53.4 4.1e-119 425.2
Blo07g01301 . 3 410 U-box Gene Family AT2G35930 55.3 5.0e-127 451.4
Blo01g01249 . 1 392 U-box Gene Family AT2G35930 53.3 3.4e-115 412.1
Blo08g00063 . 6 400 U-box Gene Family AT2G35930 51.6 9.9e-115 410.6
Blo05g00558 . 1 418 U-box Gene Family AT5G64660 53.4 2.0e-118 422.9
Blo05g00558 . 1 418 U-box Gene Family AT5G09800 51.6 2.7e-104 375.9
Blo04g01095 . 1 449 U-box Gene Family AT3G49810 71.5 2.1e-179 625.5
Blo16g00339 . 1 449 U-box Gene Family AT3G49810 69.4 2.3e-173 605.5
Blo17g00893 . 1 448 U-box Gene Family AT3G49810 62.2 7.1e-151 530.8
Blo04g01095 . 1 449 U-box Gene Family AT5G65920 67.0 7.3e-164 573.9
Blo16g00339 . 1 449 U-box Gene Family AT5G65920 66.2 2.3e-162 568.9
Blo17g00893 . 19 448 U-box Gene Family AT5G65920 63.7 1.2e-150 530.0
Blo18g00061 . 504 786 U-box Gene Family AT2G45910 51.2 7.4e-77 285.8
Blo15g00114 . 57 569 U-box Gene Family AT4G25160 56.2 3.4e-162 569.3
Blo15g00115 . 17 192 U-box Gene Family AT4G25160 53.4 2.1e-47 188.0
Blo18g00742 CCT 4 813 U-box Gene Family AT1G76390 63.9 4.6e-281 964.1
Blo01g01639 CCT 12 813 U-box Gene Family AT1G76390 60.1 3.7e-267 917.9
Blo18g00742 CCT 7 813 U-box Gene Family AT1G20780 63.7 9.1e-282 966.5
Blo01g01639 CCT 12 809 U-box Gene Family AT1G20780 60.5 1.5e-268 922.5
Blo01g00365 BCT,CCT 69 829 U-box Gene Family AT1G27910 62.1 1.5e-265 912.5
Blo16g01194 BCT,CCT 127 883 U-box Gene Family AT1G27910 61.0 9.1e-255 876.7
Blo06g00829 CCT 1 745 U-box Gene Family AT1G27910 58.8 7.2e-236 813.9
Blo16g01191 . 7 588 U-box Gene Family AT1G27910 55.4 3.6e-187 652.1
Blo06g00020 . 1 593 U-box Gene Family AT5G67530 75.4 8.3e-264 906.4
Blo06g00019 . 1 153 U-box Gene Family AT5G67530 72.5 1.4e-56 218.0
Blo06g00015 . 1 166 U-box Gene Family AT5G67530 56.6 3.1e-53 206.8
Blo16g00624 . 681 808 U-box Gene Family AT5G67530 56.3 4.1e-37 153.3
Blo15g00114 . 52 569 U-box Gene Family AT5G61560 55.9 1.0e-155 547.7
Blo15g00114 . 57 569 U-box Gene Family AT5G61550 58.4 4.0e-171 599.0
Blo15g00114 . 5 569 U-box Gene Family AT5G51270 51.6 1.1e-154 544.3
Blo02g00770 . 63 585 U-box Gene Family AT1G04510 72.3 2.8e-223 771.5
Blo07g00287 BCT 30 515 U-box Gene Family AT1G04510 73.1 1.3e-207 719.5
Blo02g00770 . 63 549 U-box Gene Family AT2G33340 72.9 1.9e-210 728.8
Blo07g00287 BCT 30 483 U-box Gene Family AT2G33340 72.7 1.3e-193 672.9
Blo10g00672 . 7 277 U-box Gene Family AT3G07370 60.5 3.6e-92 335.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001728 2 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 3 2 2 2 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g01301 Blo_Chr07 FPKM 18.203703 19.356775 10.020793 7.171396 20.662521 23.15398 20.536774 16.2875 18.396669 19.070023