Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01301 ATGGCAGATATCGACGTGCCTCCTTATTTTCTCTGCCCGATTTCTCTAGAGATCATGAAAGATCCTGTCACTGTTTCGTCTGGGATAACCTACGATCGTCAAAGCATAGAGAAATGGTTGTATTCAAATAGAAATGATTTTTGTCCTGTTTCGAAACAACTCGTCTCCGGCTCCGATCTCACTCCGAACCATACTCTCCGGCGACTTATACAAGCGTGGTGCACCGTCAACGCCTCCAACGACGTCCAGAGAATTCCGACGCCGAAACCTCCTATTAGCAAGAAGCAGATCGTCAAGATTTTGAATGATGCGAAATCACCTCTCTCTCAGCTAAAATGTCTAAAAAATCTCCGATCCATTGCCGCCGAGAGCGAGAGTAATAAACGTTGCATCGAATCTGCCGGAGCCATCGAGTTTTTAGCTTCAATAGTAATTTCCTCCGTCCCCTACGCTCCGGAAGAAGATTCCAGCATGGGTTTGGATCGCACTAGAGCGTGTGATGAGGCTTTAAGTACTCTACATAATCTCCAAATCTCCGAAGCCGGGATGAAATCTCTTGGCGGAAAAAATGGCGAATTCATCGAAGCCCTAGTCAAAGTAATCCAACGAGGGAGCTACGATTCACGAGCCTATTCAACCATGTTATTGAAATCAATACTCGAACTTACCGATTCTACAAAACTGAGCAATCTCAGGGTCGCGTTCTTCACAGAAATAATTCAAGTTCTCAGCGATCAAATTTCCCACCAATCTTCTATTGCTGCATTGCAAATACTGATAAACCTTCTTCCATGTGGGCGGAATCGACTAAAAGCTGTCGAGGCCGGGGGCGTAACTGTTCTTATCGAGCTTCTTCTCACCTCGCCGGAACGTCGGCAAAGCGAGATGATGCTCACTGCCTTGGACTTGCTATGTGGGTGCGCAAACGGGCGGGCCGAGTTGCTCAATCACGGAGCGGGTTTGGCGGTGGTGTCGAAGAAGATTCTTAGGGTTTCTCAGTTAGGAAACGAGAAATCTGTGAGGATCTTGAACTCAATATCGAAATACTCCGCCACTCCAGCTGTTCTTCAGGATATGCTGAGTCTAGGAGTTGTCGCAAAATTGTGTTTGATTCTTCAGGTCGAATGTGGAAGCAAGGCAAAGGAGAAAGCAAAACAGATTCTTAAGCTCCACGGTCGATCATGGCGGAATTCGCCATGCATTCCTGCAAATTTGCTTTCTTCTTATCCATCGTCTTCTTTAAAAAAAAGGGATCAAGAGGATTTGTGA 1269 46.1 MADIDVPPYFLCPISLEIMKDPVTVSSGITYDRQSIEKWLYSNRNDFCPVSKQLVSGSDLTPNHTLRRLIQAWCTVNASNDVQRIPTPKPPISKKQIVKILNDAKSPLSQLKCLKNLRSIAAESESNKRCIESAGAIEFLASIVISSVPYAPEEDSSMGLDRTRACDEALSTLHNLQISEAGMKSLGGKNGEFIEALVKVIQRGSYDSRAYSTMLLKSILELTDSTKLSNLRVAFFTEIIQVLSDQISHQSSIAALQILINLLPCGRNRLKAVEAGGVTVLIELLLTSPERRQSEMMLTALDLLCGCANGRAELLNHGAGLAVVSKKILRVSQLGNEKSVRILNSISKYSATPAVLQDMLSLGVVAKLCLILQVECGSKAKEKAKQILKLHGRSWRNSPCIPANLLSSYPSSSLKKRDQEDL 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33251332 33252600 - BLOR19233 Blo07g01301 63825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01301 422 SUPERFAMILY RING/U-box 4 77 - -
Blo07g01301 422 SUPERFAMILY ARM repeat 97 394 IPR016024 -
Blo07g01301 422 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Blo07g01301 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Blo07g01301 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 411 - -
Blo07g01301 422 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Blo07g01301 422 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Blo07g01301 422 Gene3D - 94 399 IPR011989 -
Blo07g01301 422 CDD RING-Ubox_PUB 10 53 IPR045210 -
Blo07g01301 422 PANTHER WDSAM1 PROTEIN 1 411 IPR045185 GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01301 Blo-Chr7:33251332 Blo08g00063 Blo-Chr8:542463 8.09E-158 dispersed
Blo16g00641 Blo-Chr16:25629780 Blo07g01301 Blo-Chr7:33251332 1.06E-75 transposed
Blo01g01249 Blo-Chr1:47405528 Blo07g01301 Blo-Chr7:33251332 0 wgd
Blo14g00246 Blo-Chr14:2197355 Blo07g01301 Blo-Chr7:33251332 5.06E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01301 - - mnt:21399943 549.666