Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01371 ATGGAGGTCGCTCCGACGGCGTCCCCCTCCCCATCCCCCGCCCTTACTTCGCTCTACGTTGGTGACCTTCATCCCGACGTTACGGACGACATTCTTCATAATGCTTTCTCCCAATTCGACAGCCTCAACTCGGTTCGTGTCTGTAAGGACTCCACCACTGGCCGTGCCCTCTGTTACGGTTATGTCAATTTTACCTCTCCTCAAGATGCAATAAACGCAATTGCGGAAAAGAACCATTGTTTTCTGAACGGGAAAATGATAAGAGTCATGCATTTGCATCGTGATTCTGATGCAAGGAAAAGTGGAATTGGCAACGTGTTTGTCAAGAACTTGAGTGATTCGATCAGCAATGCAGGGCTCGAAGAGATCTTTAAAAGTTTTGGTACTATTGTCTCCTGCAAAGTTTCCATGACAGACGATGGGAAGAGTAGGTGTTATGGTTTTGTTCAATTTGAGTCTGAAGATTCTGCAATTGCTGCTATTGAGAAGTTACATGGCTTAACCATAGATGGGAAGCAGATCTACGTCGGGAAATTTATTAAGAAGAGCGATCGACTCATGGCTAACAATGATACTAAATATACAAATTTGTATATGAAGAATTTGGATCCACAAATTGGGGAGGAGCTTTTGCATAAAAAGTTCTCGGAGTTTGGAAAAATTGCTAGCTTGGTTATCGCAAAGGATGAGATCGGAATATCGAAAGGTTTCGGCTTTGTAAACTTTGATAATTACGAAGATGCCAAATGTGCGATGGAAGAGATGAACGGATCACAAGTTGGCTCGAAGGTTCTCTACGTAGCAAGGGCGCAGAAGAAGATAGAACGCGAAGAAATGTTGCGTAGAGAGTTCGAGGAAAAGCGAAAGGACCTGCTAGTGAAATACAAGGGCTTAAATGTGTATGTAAAGAACATAAATGATGATGTCACGGACGAGGAATTTGGAGAACATTTCAGTCAGTGTGGCACGATTACTTCTGTGAAAATTATGCGGAATGGCAAAGGAATAAGCAAAGGGTTTGGATTTATTTGCTTCTCTTCTGAGGAGGAGGCAAACAAAGCTGTGAACACCTTTTATGGCCATATGTTTCATGGAAAGCCATTATATGTGGCTATTGCTCAAAGGAAAGAGGAAAGACAAACACAACTGCAGATTCATTTCGCTCACCGGATGACTGGACTAGTTCCGGCTGCATATCCTCCTTTCTTTTTCACGGCTCCTCCCGTTGCTGTTCCTGTTTCGGCATTGCCACAGAGACCTGTCCTGATCGATCAACCTTTAGGATTAGGACCCGGATGGAGGACCACTAGCTTTGCTTCGCCAATTGGACCGCCTGGCTTTCAACTACCTGCCCCTCTTACTGCTAATCCTCCTAGACAGGCTAGGCATAACAGGGGAAGGATGAATGAGCAATTTCTTCCTCTGAATAATGCTCACGCTGGTTTATATAAACAATATTTCCACCAACCCAATCAATCTATATTTCACTCCAACGATTCAGGCAATCAGCAGGCTGGACAGTCCAAGTATGTACCAAAGTTGCGTACAAACCAGCATGCTGGTTCCGACAAAGCTAGTTTCGGGTCAGCGAGCTCACAGATACTTAGCATAGAGCTGTCTGCTGCTTCTCCCGAGCAGCAGAAGCAAATACTCGGTGAACGTCTCTGTCCACTGGTCCAAAAATATAAGCCGGAGCATGCGGCGAAAATAACAGGAATGCTTTTGGAGTTGGACAGCTCTGAATTGCTACACTTGTTGGATTCGCCAGAGTCGTTGGCCGCCAAGGTGGACGAAGCAGTCCAAGTTCTGAAGATTTCTAAGACCAACGCATCAAGCCCGGACTCACTTCATTCCAGTTTTTTATCAGCTGAGGTTGCAGTCAGTTGA 1887 44.99 MEVAPTASPSPSPALTSLYVGDLHPDVTDDILHNAFSQFDSLNSVRVCKDSTTGRALCYGYVNFTSPQDAINAIAEKNHCFLNGKMIRVMHLHRDSDARKSGIGNVFVKNLSDSISNAGLEEIFKSFGTIVSCKVSMTDDGKSRCYGFVQFESEDSAIAAIEKLHGLTIDGKQIYVGKFIKKSDRLMANNDTKYTNLYMKNLDPQIGEELLHKKFSEFGKIASLVIAKDEIGISKGFGFVNFDNYEDAKCAMEEMNGSQVGSKVLYVARAQKKIEREEMLRREFEEKRKDLLVKYKGLNVYVKNINDDVTDEEFGEHFSQCGTITSVKIMRNGKGISKGFGFICFSSEEEANKAVNTFYGHMFHGKPLYVAIAQRKEERQTQLQIHFAHRMTGLVPAAYPPFFFTAPPVAVPVSALPQRPVLIDQPLGLGPGWRTTSFASPIGPPGFQLPAPLTANPPRQARHNRGRMNEQFLPLNNAHAGLYKQYFHQPNQSIFHSNDSGNQQAGQSKYVPKLRTNQHAGSDKASFGSASSQILSIELSAASPEQQKQILGERLCPLVQKYKPEHAAKITGMLLELDSSELLHLLDSPESLAAKVDEAVQVLKISKTNASSPDSLHSSFLSAEVAVS 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33840541 33844024 - BLOR19303 Blo07g01371 63895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01371 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Blo07g01371 628 SUPERFAMILY RNA-binding domain, RBD 297 385 IPR035979 GO:0003676
Blo07g01371 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 531 608 IPR002004 GO:0003723
Blo07g01371 628 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
Blo07g01371 628 PANTHER RNA BINDING PROTEIN 529 613 - -
Blo07g01371 628 PANTHER RNA BINDING PROTEIN 14 510 - -
Blo07g01371 628 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 17 604 IPR006515 GO:0003723
Blo07g01371 628 Gene3D - 529 621 - -
Blo07g01371 628 CDD RRM4_I_PABPs 297 375 - -
Blo07g01371 628 SUPERFAMILY PABC (PABP) domain 459 612 IPR036053 GO:0003723
Blo07g01371 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 375 IPR000504 GO:0003723
Blo07g01371 628 PANTHER POLYADENYLATE-BINDING PROTEIN 529 613 - -
Blo07g01371 628 PANTHER POLYADENYLATE-BINDING PROTEIN 14 510 - -
Blo07g01371 628 SUPERFAMILY RNA-binding domain, RBD 105 273 IPR035979 GO:0003676
Blo07g01371 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Blo07g01371 628 Coils Coil 267 294 - -
Blo07g01371 628 SMART rrm2_1 299 371 IPR003954 GO:0003676
Blo07g01371 628 SMART rrm2_1 105 177 IPR003954 GO:0003676
Blo07g01371 628 SMART rrm2_1 196 268 IPR003954 GO:0003676
Blo07g01371 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 368 IPR000504 GO:0003723
Blo07g01371 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 174 IPR000504 GO:0003723
Blo07g01371 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Blo07g01371 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 265 IPR000504 GO:0003723
Blo07g01371 628 Pfam Poly-adenylate binding protein, unique domain 538 603 IPR002004 GO:0003723
Blo07g01371 628 Gene3D - 98 185 IPR012677 -
Blo07g01371 628 SMART rrm1_1 196 268 IPR000504 GO:0003723
Blo07g01371 628 SMART rrm1_1 105 177 IPR000504 GO:0003723
Blo07g01371 628 SMART rrm1_1 299 371 IPR000504 GO:0003723
Blo07g01371 628 SMART rrm1_1 17 90 IPR000504 GO:0003723
Blo07g01371 628 CDD RRM2_I_PABPs 102 178 IPR045305 -
Blo07g01371 628 Gene3D - 2 97 IPR012677 -
Blo07g01371 628 Gene3D - 186 285 IPR012677 -
Blo07g01371 628 Gene3D - 286 385 IPR012677 -
Blo07g01371 628 SMART poly_2 543 606 IPR002004 GO:0003723
Blo07g01371 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g01371 Blo09g00527 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00479 Blo-Chr4:3968617 Blo07g01371 Blo-Chr7:33840541 4.78E-141 dispersed
Blo07g01371 Blo-Chr7:33840541 Blo17g00873 Blo-Chr17:28792878 4.65E-127 dispersed
Blo10g00103 Blo-Chr10:1083185 Blo07g01371 Blo-Chr7:33840541 1.36E-10 transposed
Blo07g01371 Blo-Chr7:33840541 Blo09g00527 Blo-Chr9:16476885 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01371 K13126 - vvi:100267544 716.072