Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01380 ATGGAGGAGTCATTAGGTCGGGTTCGGGGTCCAACTCAGATGGATGGAAATGCGAGTAATTGTATAGATGTGGCTTCTCCGAATGGTTTCTGCAAGAGATTCAAAGGTTCAGCTGTTAACGGTTTGATTGTCTATACGAGAGAAAGGAAATCTGGTATCAATTTGTGTAATGGCTTTTCCGAGAATGATGAAAGCCAGAAAACTAATAGCTTAGACGAGCTCGAGAACGGTCGGAACTCTTCGCTTGAAGAAGTGAAAAAGATCGAAGAGGTAGAGACATTAGTTATTGATAAGCACCGCAGAAATTTAAAATCTTCCATTTGTGAAAATGCGTTTGAGAGGACGGCACTGAAACCTCCAGCGAGAAGAGAAGCAGAGCACGCTGAGGTCGAAATTGCTGACGATGAAGTGACAAAGAAAGATTTGCCTAGAAAGGTGGTTAGGCGATTTACGCGTTCGGCATTGAGACCTGAACATGAGCGTACAGAGATCTCCTCGACGAAAACAGAAACTGTTGATAAAGAAGACATTTTGAGTATGGAAACAGAGACAGCTACTCCGAAGTATAAGGTGGAAATGAGGATGGTGAAAAAGTCTGCCTCGAGTAAGAGCCTAATGACAGTGAGGGAGCTATTTGAAACTGGCTTCCTAGAAGGAGTACCTGTTGTATATATGGGTAGCAGGAAGGGGATCGATTACGGTCTGCGTGGGACGATTAGAGGTGGTGGGATTTTATGCACGTGTTTATCCTGTAATGGATGCAAAGTTATCCCGCCATCCAAATTTGAGATTCATGCTTGCAAACAATACAAACGAGCCGCACAATATATATGCCTTGAAAATGGTACAAGCCTGTTAGACTTACTGAAGGCATGCAGGGGAAACGCTCTGCATAAACTGGAGGCAACAATTCGGAGTGTAGTCAATTCTTCTTCGGAAGAGAGAATTTTCACTTGCAGCGGGTGTAAAGGGCGCTTTCCTTTACCAAGTTTGGGCCAAGTTGAACCTCTATGCACTTCATGTGCAGAGTCGAAGAAATCTGAACCCATCCCAACCCCACAAACTCCACCGCCTTCTGCACCTGATAGGCCTTGGTCACCAGAGCCGGTCAAGATCTTGAAGTCCCCTCAAAGGACGCCAATGCATATATCTTCACAAAGAAGAAGCGAATCGAAGATAAAAACAAAGTCACCCAAGAGAGTTATGACCTCAAAATCCTCGAAGAGTGCTCCGGTACATATTCGACCACAAAAAAGGATCTCCGAGAAGATAAAAAATAGGTTGTCAAATCCAAAGTCCATTTTGAAGTCCTCGAGAAGTGCTCCCAAATGCGATACTTCACAAAACAAAAGTCAATGGAAGTTAACGACAAAAGATCAACGTTTGCATAAGTTGGTCTTTGAGGAAGGTGGATTGCCTGAGGGAACCGAATTAGCATATTTTGCTCGAGGACAGAAATTGCTCCAAGGTTACAAGAAGGGTTCTGGAATTTTTTGTTGCTGCTGCAATTGTGAGGTTAGTCCTTCACAATTTGAAGTTCATGCTGGTTGGTCGTCTCGAAGAAAACCTTATGCATACATTTATACATCGAATGGGGTGTCTCTCCATGAATTGGCAATCTCTCTCTCGAAAGGGCGCAAATATTCTGCCAATGATAATGATGATGTATGTATAATATGTTTAGATGGTGGGAATCTTCTGCTTTGTGATGGTTGCCCCAGGGCTTTCCACAAAGAATGTGCATCGCTTCCAAGTATTCCTCGTGGAGATTGGTATTGTAAATTTTGTCAGAATATGTACCAAAGAGATAAATTTGTGGAGTATAATGCAAATGCTGTTGCTGCTGGGAGGACTTCTGGAGTTGATCCCATTGATGATATATCCAAAAGATGTATTCGAATAGTCAAAAATATTGAAACTGAACTTAGTGGATGTGTGTTGTGCCGAGGGTCTGATTTCAGCAAATCAGGATTTGGTCCACGCACAATTATACTTTGTGATCAGTGTGAGAAGGAATTTCATGTTGGCTGTTTGAAGGACCATAAAATGGCATTTCTTAAGGAACTACCAAAAGGGAAGTGGTTTTGTGGTACGGATTGCACTAGGATACATTCTGCTCTGCAGAAGCTGCTTTTACGCGGGGAAGAGAAGGTTCCAGCCTCTCTTTGCAGCGTTATGAACAAGAAGCTTGTGGAGAAAGGCTTAGATACTGCTAATGATATTGATGTCAGATGGCAACTTATCAGTGGAAACATTGCTTCACCTGAAACTAGACCTTTAGTCTCAGAAGTTGTTGCCATCTTTCACGATTGCTTCGATCCGATAATTGACATAACAAGTGGCCGCGACCTCATCCCGGCCATGGTTTATGGAAGGGATGTAGGGGGACAAGAGTTTGGGGGAATGTATTGTGCAATATTAATAGTCAACTCATCTGTTGTATCAGCTGCAATGCTTCGAGTTTTCGGCCAAGAACTTGCAGAACTACCCTTAGTTGCCACAAGCTTCGTTAATCGGGGAAAGGGCTATTTTCAAATACTGTTCTCCTGTATTGAGCGGCTCCTTGCTTACATGCGCGTGAAGAACCTTGTTCTCCCGGCTGCTGAAGAAGCCGAATCCATATGGACTGATAAATTCTCTTTTAAGAGGATGACACCCGAGCAGCTTAGTAAGTACAGAAGAATCTGCTACCAAATGGTGACATTCAAAGGCACGTCTATGCTTGAGAAGACGGTTCCCTCGTGCCGAGTCATCAATACATAA 2763 43.29 MEESLGRVRGPTQMDGNASNCIDVASPNGFCKRFKGSAVNGLIVYTRERKSGINLCNGFSENDESQKTNSLDELENGRNSSLEEVKKIEEVETLVIDKHRRNLKSSICENAFERTALKPPARREAEHAEVEIADDEVTKKDLPRKVVRRFTRSALRPEHERTEISSTKTETVDKEDILSMETETATPKYKVEMRMVKKSASSKSLMTVRELFETGFLEGVPVVYMGSRKGIDYGLRGTIRGGGILCTCLSCNGCKVIPPSKFEIHACKQYKRAAQYICLENGTSLLDLLKACRGNALHKLEATIRSVVNSSSEERIFTCSGCKGRFPLPSLGQVEPLCTSCAESKKSEPIPTPQTPPPSAPDRPWSPEPVKILKSPQRTPMHISSQRRSESKIKTKSPKRVMTSKSSKSAPVHIRPQKRISEKIKNRLSNPKSILKSSRSAPKCDTSQNKSQWKLTTKDQRLHKLVFEEGGLPEGTELAYFARGQKLLQGYKKGSGIFCCCCNCEVSPSQFEVHAGWSSRRKPYAYIYTSNGVSLHELAISLSKGRKYSANDNDDVCIICLDGGNLLLCDGCPRAFHKECASLPSIPRGDWYCKFCQNMYQRDKFVEYNANAVAAGRTSGVDPIDDISKRCIRIVKNIETELSGCVLCRGSDFSKSGFGPRTIILCDQCEKEFHVGCLKDHKMAFLKELPKGKWFCGTDCTRIHSALQKLLLRGEEKVPASLCSVMNKKLVEKGLDTANDIDVRWQLISGNIASPETRPLVSEVVAIFHDCFDPIIDITSGRDLIPAMVYGRDVGGQEFGGMYCAILIVNSSVVSAAMLRVFGQELAELPLVATSFVNRGKGYFQILFSCIERLLAYMRVKNLVLPAAEEAESIWTDKFSFKRMTPEQLSKYRRICYQMVTFKGTSMLEKTVPSCRVINT 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33895638 33901393 + BLOR19312 Blo07g01380 63904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01380 920 Pfam PHD-finger 557 598 IPR019787 -
Blo07g01380 920 MobiDBLite consensus disorder prediction 427 451 - -
Blo07g01380 920 Pfam Tify domain binding domain 490 540 IPR032308 -
Blo07g01380 920 Pfam Tify domain binding domain 237 292 IPR032308 -
Blo07g01380 920 ProSiteProfiles Zinc finger PHD-type profile. 554 599 IPR019787 -
Blo07g01380 920 SMART PHD_3 556 597 IPR001965 -
Blo07g01380 920 SMART PHD_3 644 701 IPR001965 -
Blo07g01380 920 ProSitePatterns Zinc finger PHD-type signature. 557 596 IPR019786 -
Blo07g01380 920 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 29 918 - -
Blo07g01380 920 CDD PHD1_AIRE 557 596 - -
Blo07g01380 920 SUPERFAMILY FYVE/PHD zinc finger 544 599 IPR011011 -
Blo07g01380 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 703 IPR013083 -
Blo07g01380 920 MobiDBLite consensus disorder prediction 58 78 - -
Blo07g01380 920 Coils Coil 71 91 - -
Blo07g01380 920 PANTHER AUTOIMMUNE REGULATOR 29 918 - -
Blo07g01380 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 543 622 IPR013083 -
Blo07g01380 920 MobiDBLite consensus disorder prediction 344 451 - -
Blo07g01380 920 SUPERFAMILY FYVE/PHD zinc finger 639 698 IPR011011 -
Blo07g01380 920 MobiDBLite consensus disorder prediction 350 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01380 - - - cpep:111800114 1155.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01380 Blo-Chr7:33895638 Blo01g00125 Blo-Chr1:1690653 2.20E-44 dispersed
Blo14g00207 Blo-Chr14:1750314 Blo07g01380 Blo-Chr7:33895638 4.50E-06 wgd
Blo07g01380 Blo-Chr7:33895638 Blo09g00531 Blo-Chr9:16520070 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo07g01380 . 207 919 PHD Transcription Factor Family AT2G36720 55.4 5.9e-230 794.7
Blo04g00288 BCT 431 557 PHD Transcription Factor Family AT3G53680 55.1 1.5e-37 155.2
Blo12g00329 . 856 1706 PHD Transcription Factor Family AT4G14920 50.7 8.2e-228 787.7
Blo06g00995 . 25 640 PHD Transcription Factor Family AT5G22260 51.4 1.7e-177 619.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12691 PF16135 TDBD 3.30E-12 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g01380 Blo_Chr07 FPKM 14.772235 16.886173 16.078588 11.856187 15.341402 23.252554 13.892228 21.323763 22.134626 22.612993