Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g01419 ATGCCACTAATTCCAGAGAGACACTTTCTTTTGCAAGGTGCTAATGGCCCTGGAGATTCAGGACTTGTGCTCTCCACTGACGCCAAACCTCGTTTAAAGTGGACCCATGAGCTCCATGAGCGTTTCATTGAAGCAGTCAGTCAGCTTGGTGGAGCTGAGAAAGCAACACCCAAGACTGTGATGAAAGTAATGGGTATACCTGGACTTACTTTGTATCACTTAAAGAGTCATCTTCAGAAGTACAGGTTGAGCAAGAATGTGCACGGGCAACCTAATGGTGAGACCAACAAAATTGGTGCGGCTGCAGTGGCTGAAAACAGACTGACAGAAGCGAACGGAAGTCACACCAACAACTTCATTGCTGGGTCTCAGACCAACAAAAGCTTAGAGATAAGTGAAGCTCTACACATGCAAATTGAAGTGCAGAGAAGGCTGCACGAGCAGCTTGAGGTACAGCGACACCTGCAGCTGCGGATAGAAGCCCAGGGAAAGTACCTGCAGTCGGTGTTAGAGAAAGCGCAGGAGACGTTAGGAAGGCAGAACATCGGCGCCGTCGGACTTGAAACCGCCAAGGTCCAACTCTCAGAGCTGGTTTCGAAAGTATCAACGCAGTGCCTCGCCGGTGAATTTCCGGAGCTGCAGAGGCTTTGCCCTCAGTCCCTCCAACCTCCGGATGGTTCATTTGAAAGCTGTCTGACATGCTGCGAAGGATCCCTGAAGGACCCCGAATTACACAACGGGAGTTTGGGTAATGTTGGCGGCGTTCGGTTGGACACAAAAGATGATGCGGAAGGGTGGAGTGAGGTCCTGAAAGAGACGGTGTTTTTTTCTTCCATGGGGAAGGAAGGCGAAAGATCAAACAGGAGGGTTCCAGAAGGAAGTGGCGGGGACTTATCGATGAACATGGGGCGGTATTTAGAGGAAAAGGAGGGAAGCAACAACGCGATGAGGGAAGGAGGGTCCCAGTGGAAGGGCGGGAGAGTGAGGGGAAGAGAGGAAAGCTTGTGGAAGAGGGAGGAGTCAGTGAAACAGAAACAAGGAGAGAAGGAGAAAGGGTGGTCAACGGCTCTGGATTTGAATGCAGGGGAGGATGAAAATGGAAGCTGTTCGGAAAGCAAGCAGCTGGACTTGAATGGGTTCAGCTGCGAGTAA 1152 50.95 MPLIPERHFLLQGANGPGDSGLVLSTDAKPRLKWTHELHERFIEAVSQLGGAEKATPKTVMKVMGIPGLTLYHLKSHLQKYRLSKNVHGQPNGETNKIGAAAVAENRLTEANGSHTNNFIAGSQTNKSLEISEALHMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNIGAVGLETAKVQLSELVSKVSTQCLAGEFPELQRLCPQSLQPPDGSFESCLTCCEGSLKDPELHNGSLGNVGGVRLDTKDDAEGWSEVLKETVFFSSMGKEGERSNRRVPEGSGGDLSMNMGRYLEEKEGSNNAMREGGSQWKGGRVRGREESLWKREESVKQKQGEKEKGWSTALDLNAGEDENGSCSESKQLDLNGFSCE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34184185 34185963 + BLOR19351 Blo07g01419 63943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g01419 383 PANTHER MYB-RELATED PROTEIN 2 1 381 - -
Blo07g01419 383 MobiDBLite consensus disorder prediction 365 383 - -
Blo07g01419 383 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Blo07g01419 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 381 IPR044848 GO:0003700
Blo07g01419 383 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Blo07g01419 383 MobiDBLite consensus disorder prediction 280 383 - -
Blo07g01419 383 Gene3D - 28 86 - -
Blo07g01419 383 MobiDBLite consensus disorder prediction 324 352 - -
Blo07g01419 383 Pfam MYB-CC type transfactor, LHEQLE motif 130 176 IPR025756 -
Blo07g01419 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
Blo07g01419 383 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g01419 - - - cpap:110816961 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00894 Blo-Chr3:34940684 Blo07g01419 Blo-Chr7:34184185 2.82E-31 dispersed
Blo07g01419 Blo-Chr7:34184185 Blo16g00685 Blo-Chr16:26475340 1.26E-64 dispersed
Blo07g01419 Blo-Chr7:34184185 Blo09g00329 Blo-Chr9:13637275 1.71E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1362 . . . . . Bpe03g01302 . . Cmo06g01724 Cmo14g01154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g01787 Blo07g01419 . . Bda05g01256 . . . . . . . . . . . . . Bhi11g01506 . . . . . . Cla10g01268 Cam10g1350 Cec10g1341 Cco10g1314 Clacu10g1325 Cmu10g2094 Cre10g1479 . Csa03g04029 Chy04g01368 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003788 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12698 PF00249 Myb_DNA-binding 2.80E-08 CL0123 Blo TF